double[] binaryDoubleArray
DataProcessing dataProcessing
String accession
String accessionVersion
int length
SearchDataBase searchDataBase
String sequence
String spliceIsoform
String cTermGain
ParamGroup enzymeName
int minDistance
int missedCleavages
String nTermGain
boolean semiSpecific
String siteRegExp
Provider provider
List<E> organizations
List<E> persons
ExperimentProtocol protocol
Date creationDate
Date publicDate
List<E> references
List<E> samples
Map<K,V> studyVariables
String shortLabel
List<E> softwares
List<E> sourceFiles
List<E> spectraDatas
String version
CvParam FileFormat
String externalFormatDocumentationURI
String location
int charge
double intensity
String ionType
String ionTypeAccession
int location
double massError
double mz
double retentionTimeError
Comparable<T> id
String name
Comparable<T> id
String name
Protocol proteinDetectionProtocol
List<E> searchDataBases
List<E> spectrumIdentificationProtocols
int charge
List<E> index
Map<K,V> measures
List<E> avgMassDelta
int location
String modDatabase
String modDatabaseVersion
List<E> monoisotopicMassDelta
List<E> residues
List<E> binaryDataArrays
int defaultArrayLength
DataProcessing defaultDataProcessing
int index
List<E> dataProcessings
List<E> instrumentConfigurations
List<E> scanSettings
String mail
Organization parentOrganization
DBSequence dbSequence
Integer endPosition
Integer frame
PeptideSequence peptideSequence
char postResidue
char preResidue
Integer startPosition
IdentifiableParamGroup translationTable
Boolean decoy
List<E> modifications
String sequence
List<E> substitutionModifications
ParamGroup activation
String externalSpectrumID
ParamGroup isolationWindow
List<E> selectedIons
SourceFile sourceFile
Spectrum spectrum
int order
Software software
DBSequence dbSequence
boolean passThreshold
List<E> peptides
List<E> quantPeptides
Score score
QuantScore quantScore
double sequenceCoverage
double threshold
Gel gel
Software analysisSoftware
ParamGroup threshold
Contact contact
CvParam role
Software software
String authors
String doi
String editor
String fullReference
String issue
String pages
String publication
String publisher
String title
String volume
String year
String externalSpecRef
InstrumentConfiguration instrumentConfiguration
List<E> scanWindows
SourceFile sourceFile
String spectrumRef
List<E> description
ParamGroup nameDatabase
long numDatabaseResidue
int numDatabaseSequence
String releaseDate
String version
Contact contact
String customization
String uri
String version
String externalFormatDocumentationURI
CvParam fileFormat
String path
CvParam spectrumIdFormat
List<E> peptide
List<E> precursors
List<E> products
ScanList scanList
SourceFile sourceFile
String retentionTime
String spotID
double calculatedMassToCharge
double calculatedPI
int chargeState
double experimentalMassToCharge
List<E> fragmentation
MassTable massTable
List<E> peptideEvidenceList
Score score
PeptideSequence peptideSequence
int rank
boolean passThreshold
Sample sample
SpectraData spectraData
Spectrum spectrum
String retentionTime
List<E> fragmentationTable
int numSequenceSearched
List<E> spectrumIdentificationList
DataBaseTranslation dataBaseTranslation
List<E> enzymes
List<E> filters
List<E> fragmentTolerance
List<E> massTables
List<E> parentTolerance
List<E> searchModifications
ParamGroup searchType
boolean enzymeIndependent
String type
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