uk.ac.ebi.pride.utilities.data.controller.cache

Enum CacheEntry

java.lang.Object

java.lang.Enum<CacheEntry>

uk.ac.ebi.pride.utilities.data.controller.cache.CacheEntry

All Implemented Interfaces:

Serializable, Comparable<CacheEntry>

public enum CacheEntry
extends Enum<CacheEntry>

CacheCategory provides a list of cache categories Each category defines the type of the data and the type of data structure to store the data.

Author:

Yasset Perez-Riverol, Rui Wang

Enum Constant Summary

Enum Constants

Enum Constant and Description
CHROMATOGRAM
CHROMATOGRAM_ID
CV_LOOKUP
EXPERIMENT_ACC
EXPERIMENT_METADATA
FRAGMENTATION_TABLE
MGF_INDEX_TITLE
MODIFICATION
MS_LEVEL
MZGRAPH_METADATA
NUMBER_OF_FRAGMENT_IONS
NUMBER_OF_PEAKS
PEPTIDE
PEPTIDE_END
PEPTIDE_LEVEL_SCORES
PEPTIDE_QUANT_UNIT
PEPTIDE_SEQUENCE
PEPTIDE_START
PEPTIDE_TO_MODIFICATION
PEPTIDE_TO_PARAM
PEPTIDE_TO_SPECTRUM
PRECURSOR_INTENSITY
PROTEIN
PROTEIN_ACCESSION
PROTEIN_ACCESSION_VERSION
PROTEIN_GROUP
PROTEIN_GROUP_ID
PROTEIN_ID
PROTEIN_LEVEL_SCORES
PROTEIN_METADATA
PROTEIN_QUANT_UNIT
PROTEIN_SEARCH_DATABASE
PROTEIN_SEARCH_DATABASE_VERSION
PROTEIN_TO_PARAM
PROTEIN_TO_PEPTIDE
PROTEIN_TO_PEPTIDE_EVIDENCES
PROTEIN_TO_PROTEIN_GROUP_ID
PROTEIN_TO_QUANTPEPTIDES
QUANTPEPTIDE_TO_SPECTREUM
SCORE
SEARCH_DATABASE
SEARCH_ENGINE_TYPE
SPECTRA_DATA
SPECTRA_DATA_MGF_TITLE
SPECTRADATA_TO_SPECTRUMIDS
SPECTRUM
SPECTRUM_ID
SPECTRUM_LEVEL_PRECURSOR_CHARGE
SPECTRUM_LEVEL_PRECURSOR_MZ
SUM_OF_INTENSITY
THRESHOLD
TITLE_MGF_INDEX

Method Summary

Methods

Modifier and Type	Method and Description
Class	getDataStructType()
Integer	getSize()
static CacheEntry	valueOf(String name) Returns the enum constant of this type with the specified name.
static CacheEntry[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

SPECTRUM

public static final CacheEntry SPECTRUM

SPECTRADATA_TO_SPECTRUMIDS

public static final CacheEntry SPECTRADATA_TO_SPECTRUMIDS

PROTEIN_TO_PEPTIDE_EVIDENCES

public static final CacheEntry PROTEIN_TO_PEPTIDE_EVIDENCES

PROTEIN_TO_PROTEIN_GROUP_ID

public static final CacheEntry PROTEIN_TO_PROTEIN_GROUP_ID

PROTEIN_GROUP_ID

public static final CacheEntry PROTEIN_GROUP_ID

CHROMATOGRAM

public static final CacheEntry CHROMATOGRAM

PROTEIN

public static final CacheEntry PROTEIN

PROTEIN_GROUP

public static final CacheEntry PROTEIN_GROUP

PEPTIDE

public static final CacheEntry PEPTIDE

EXPERIMENT_ACC

public static final CacheEntry EXPERIMENT_ACC

EXPERIMENT_METADATA

public static final CacheEntry EXPERIMENT_METADATA

PROTEIN_METADATA

public static final CacheEntry PROTEIN_METADATA

MZGRAPH_METADATA

public static final CacheEntry MZGRAPH_METADATA

SEARCH_ENGINE_TYPE

public static final CacheEntry SEARCH_ENGINE_TYPE

PROTEIN_LEVEL_SCORES

public static final CacheEntry PROTEIN_LEVEL_SCORES

PEPTIDE_LEVEL_SCORES

public static final CacheEntry PEPTIDE_LEVEL_SCORES

SPECTRUM_ID

public static final CacheEntry SPECTRUM_ID

CHROMATOGRAM_ID

public static final CacheEntry CHROMATOGRAM_ID

PROTEIN_ID

public static final CacheEntry PROTEIN_ID

MS_LEVEL

public static final CacheEntry MS_LEVEL

SPECTRUM_LEVEL_PRECURSOR_CHARGE

public static final CacheEntry SPECTRUM_LEVEL_PRECURSOR_CHARGE

SPECTRUM_LEVEL_PRECURSOR_MZ

public static final CacheEntry SPECTRUM_LEVEL_PRECURSOR_MZ

PRECURSOR_INTENSITY

public static final CacheEntry PRECURSOR_INTENSITY

PROTEIN_ACCESSION

public static final CacheEntry PROTEIN_ACCESSION

PROTEIN_ACCESSION_VERSION

public static final CacheEntry PROTEIN_ACCESSION_VERSION

PROTEIN_SEARCH_DATABASE

public static final CacheEntry PROTEIN_SEARCH_DATABASE

PROTEIN_SEARCH_DATABASE_VERSION

public static final CacheEntry PROTEIN_SEARCH_DATABASE_VERSION

SCORE

public static final CacheEntry SCORE

THRESHOLD

public static final CacheEntry THRESHOLD

PROTEIN_TO_PARAM

public static final CacheEntry PROTEIN_TO_PARAM

PROTEIN_TO_PEPTIDE

public static final CacheEntry PROTEIN_TO_PEPTIDE

PEPTIDE_SEQUENCE

public static final CacheEntry PEPTIDE_SEQUENCE

PEPTIDE_START

public static final CacheEntry PEPTIDE_START

PEPTIDE_END

public static final CacheEntry PEPTIDE_END

PEPTIDE_TO_SPECTRUM

public static final CacheEntry PEPTIDE_TO_SPECTRUM

QUANTPEPTIDE_TO_SPECTREUM

public static final CacheEntry QUANTPEPTIDE_TO_SPECTREUM

PROTEIN_TO_QUANTPEPTIDES

public static final CacheEntry PROTEIN_TO_QUANTPEPTIDES

PEPTIDE_TO_PARAM

public static final CacheEntry PEPTIDE_TO_PARAM

NUMBER_OF_FRAGMENT_IONS

public static final CacheEntry NUMBER_OF_FRAGMENT_IONS

PEPTIDE_TO_MODIFICATION

public static final CacheEntry PEPTIDE_TO_MODIFICATION

MODIFICATION

public static final CacheEntry MODIFICATION

SUM_OF_INTENSITY

public static final CacheEntry SUM_OF_INTENSITY

NUMBER_OF_PEAKS

public static final CacheEntry NUMBER_OF_PEAKS

SEARCH_DATABASE

public static final CacheEntry SEARCH_DATABASE

PROTEIN_QUANT_UNIT

public static final CacheEntry PROTEIN_QUANT_UNIT

PEPTIDE_QUANT_UNIT

public static final CacheEntry PEPTIDE_QUANT_UNIT

FRAGMENTATION_TABLE

public static final CacheEntry FRAGMENTATION_TABLE

CV_LOOKUP

public static final CacheEntry CV_LOOKUP

SPECTRA_DATA

public static final CacheEntry SPECTRA_DATA

MGF_INDEX_TITLE

public static final CacheEntry MGF_INDEX_TITLE

SPECTRA_DATA_MGF_TITLE

public static final CacheEntry SPECTRA_DATA_MGF_TITLE

TITLE_MGF_INDEX

public static final CacheEntry TITLE_MGF_INDEX

Method Detail

values

public static CacheEntry[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (CacheEntry c : CacheEntry.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static CacheEntry valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getDataStructType

public Class getDataStructType()

getSize

public Integer getSize()