uk.ac.ebi.pride.utilities.data.core

Class Chromatogram

java.lang.Object

uk.ac.ebi.pride.utilities.data.core.ParamGroup

uk.ac.ebi.pride.utilities.data.core.IdentifiableParamGroup

uk.ac.ebi.pride.utilities.data.core.MzGraph

uk.ac.ebi.pride.utilities.data.core.Chromatogram

All Implemented Interfaces:

Serializable, MassSpecObject

public class Chromatogram
extends MzGraph

Chromatogram object.

In mzML 1.1.0.1, the following cv terms must be added:

1. May include one or more child terms of "chromatogram attribute" (highest observed m/z, highest observed wavelength and et al)

2. Must include only one child term of "chromatogram type" (total ion current chromatogram, selected ion current chromatogram, basepeak chromatogram)

Author:

Yasset Perez-Riverol, Rui Wang

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Chromatogram(Comparable id, String name, int index, DataProcessing defaultDataProcessing, int defaultArrayLength, List<BinaryDataArray> binaryDataArrays)
Chromatogram(ParamGroup params, Comparable id, String name, int index, DataProcessing defaultDataProcessing, int defaultArrayLength, List<BinaryDataArray> binaryDataArrays)

Method Summary

Methods

Modifier and Type	Method and Description
BinaryDataArray	getIntensityArray()
BinaryDataArray	getTimeArray()

Methods inherited from class uk.ac.ebi.pride.utilities.data.core.MzGraph

equals, getBinaryDataArray, getBinaryDataArrays, getDataProcessing, getDefaultArrayLength, getIndex, hashCode, setBinaryDataArrays, setDataProcessing, setDefaultArrayLength, setIndex

Methods inherited from class uk.ac.ebi.pride.utilities.data.core.IdentifiableParamGroup

getId, getName, setId, setName, toString

Methods inherited from class uk.ac.ebi.pride.utilities.data.core.ParamGroup

addCvParam, addCvParams, addUserParam, addUserParams, getCvParams, getUserParams, isEmpty, removeCvParam, removeCvParams, removeUserParam, removeUserParams, setCvParams, setUserParams

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Chromatogram

public Chromatogram(Comparable id,
            String name,
            int index,
            DataProcessing defaultDataProcessing,
            int defaultArrayLength,
            List<BinaryDataArray> binaryDataArrays)

Chromatogram

public Chromatogram(ParamGroup params,
            Comparable id,
            String name,
            int index,
            DataProcessing defaultDataProcessing,
            int defaultArrayLength,
            List<BinaryDataArray> binaryDataArrays)

Method Detail

getIntensityArray

public BinaryDataArray getIntensityArray()

getTimeArray

public BinaryDataArray getTimeArray()