public class Peptide extends Object
Constructor and Description |
---|
Peptide(PeptideEvidence peptideEvidence,
SpectrumIdentification spectrumIdentification) |
Modifier and Type | Method and Description |
---|---|
boolean |
equals(Object o) |
List<FragmentIon> |
getFragmentation() |
List<Modification> |
getModifications() |
PeptideEvidence |
getPeptideEvidence() |
List<PeptideEvidence> |
getPeptideEvidenceList() |
PeptideSequence |
getPeptideSequence() |
int |
getPrecursorCharge() |
double |
getPrecursorMz() |
QuantScore |
getQuantScore() |
Score |
getScore() |
String |
getSequence() |
int |
getSequenceLength() |
Spectrum |
getSpectrum() |
SpectrumIdentification |
getSpectrumIdentification() |
int |
hashCode() |
boolean |
hasModification() |
boolean |
isFragmentIonsChargeAnnotated() |
void |
setPeptideEvidence(PeptideEvidence peptideEvidence) |
void |
setSpectrum(Spectrum spectrum) |
void |
setSpectrumIdentification(SpectrumIdentification spectrumIdentification) |
public Peptide(PeptideEvidence peptideEvidence, SpectrumIdentification spectrumIdentification)
public PeptideEvidence getPeptideEvidence()
public void setPeptideEvidence(PeptideEvidence peptideEvidence)
public SpectrumIdentification getSpectrumIdentification()
public void setSpectrumIdentification(SpectrumIdentification spectrumIdentification)
public PeptideSequence getPeptideSequence()
public Spectrum getSpectrum()
public void setSpectrum(Spectrum spectrum)
public List<PeptideEvidence> getPeptideEvidenceList()
public List<FragmentIon> getFragmentation()
public int getSequenceLength()
public List<Modification> getModifications()
public String getSequence()
public boolean hasModification()
public int getPrecursorCharge()
public double getPrecursorMz()
public Score getScore()
public QuantScore getQuantScore()
public boolean isFragmentIonsChargeAnnotated()
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