public class PeptideSequence extends IdentifiableParamGroup implements Comparable
Constructor and Description |
---|
PeptideSequence(List<CvParam> cvParams,
List<UserParam> userParams,
String id,
String name,
String sequence,
List<Modification> modifications) |
PeptideSequence(List<CvParam> cvParams,
List<UserParam> userParams,
String id,
String name,
String sequence,
List<Modification> modifications,
List<SubstitutionModification> substitutionModifications) |
PeptideSequence(ParamGroup params,
String id,
String name,
String sequence,
List<Modification> modifications) |
PeptideSequence(ParamGroup params,
String id,
String name,
String sequence,
List<Modification> modifications,
List<SubstitutionModification> substitutionModifications) |
PeptideSequence(String sequence,
List<Modification> modifications) |
PeptideSequence(String id,
String name,
String sequence,
List<Modification> modifications) |
PeptideSequence(String id,
String name,
String sequence,
List<Modification> modifications,
List<SubstitutionModification> substitutionModifications) |
Modifier and Type | Method and Description |
---|---|
int |
compareTo(Object o) |
boolean |
equals(Object o) |
uk.ac.ebi.pride.utilities.mol.AminoAcid |
getAminoAcidByPosition(int index) |
List<uk.ac.ebi.pride.utilities.mol.AminoAcid> |
getAminoAcidList() |
List<Modification> |
getModifications() |
String |
getSequence() |
List<SubstitutionModification> |
getSubstitutionModifications() |
int |
hashCode() |
int |
length() |
void |
setModifications(List<Modification> modifications) |
void |
setSequence(String sequence) |
void |
setSubstitutionModifications(List<SubstitutionModification> substitutionModifications) |
String |
toString() |
getId, getName, setId, setName
addCvParam, addCvParams, addUserParam, addUserParams, getCvParams, getUserParams, isEmpty, removeCvParam, removeCvParams, removeUserParam, removeUserParams, setCvParams, setUserParams
public PeptideSequence(String sequence, List<Modification> modifications)
public PeptideSequence(String id, String name, String sequence, List<Modification> modifications)
public PeptideSequence(ParamGroup params, String id, String name, String sequence, List<Modification> modifications)
public PeptideSequence(String id, String name, String sequence, List<Modification> modifications, List<SubstitutionModification> substitutionModifications)
public PeptideSequence(List<CvParam> cvParams, List<UserParam> userParams, String id, String name, String sequence, List<Modification> modifications)
public PeptideSequence(List<CvParam> cvParams, List<UserParam> userParams, String id, String name, String sequence, List<Modification> modifications, List<SubstitutionModification> substitutionModifications)
public PeptideSequence(ParamGroup params, String id, String name, String sequence, List<Modification> modifications, List<SubstitutionModification> substitutionModifications)
public String getSequence()
public void setSequence(String sequence)
public List<Modification> getModifications()
public void setModifications(List<Modification> modifications)
public List<SubstitutionModification> getSubstitutionModifications()
public void setSubstitutionModifications(List<SubstitutionModification> substitutionModifications)
public List<uk.ac.ebi.pride.utilities.mol.AminoAcid> getAminoAcidList()
public int length()
public uk.ac.ebi.pride.utilities.mol.AminoAcid getAminoAcidByPosition(int index)
public boolean equals(Object o)
equals
in class IdentifiableParamGroup
public int hashCode()
hashCode
in class IdentifiableParamGroup
public int compareTo(Object o)
compareTo
in interface Comparable
public String toString()
toString
in class IdentifiableParamGroup
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.