Package | Description |
---|---|
uk.ac.ebi.pride.utilities.data.controller.impl.Transformer | |
uk.ac.ebi.pride.utilities.data.core |
Modifier and Type | Method and Description |
---|---|
static BinaryDataArray |
PrideXmlTransformer.transformBinaryDataArray(uk.ac.ebi.pride.jaxb.model.PeakListBinary rawArr,
uk.ac.ebi.pride.utilities.term.CvTermReference binaryType)
Transform BinaryDataArray from pride xml to core data model
|
Modifier and Type | Method and Description |
---|---|
BinaryDataArray |
MzGraph.getBinaryDataArray(String cvAcc)
Get either m/z array or intensity array
|
BinaryDataArray |
Chromatogram.getIntensityArray() |
BinaryDataArray |
Spectrum.getIntensityBinaryDataArray() |
BinaryDataArray |
Spectrum.getMzBinaryDataArray() |
BinaryDataArray |
Chromatogram.getTimeArray() |
Modifier and Type | Method and Description |
---|---|
List<BinaryDataArray> |
MzGraph.getBinaryDataArrays() |
Modifier and Type | Method and Description |
---|---|
void |
MzGraph.setBinaryDataArrays(List<BinaryDataArray> binaryDataArrays) |
Constructor and Description |
---|
BinaryDataArray(BinaryDataArray binaryDataArray) |
Constructor and Description |
---|
Chromatogram(Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays) |
Chromatogram(ParamGroup params,
Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays) |
MzGraph(Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays) |
MzGraph(ParamGroup params,
Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays) |
Spectrum(Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays,
String spotID,
SourceFile sourceFile,
ScanList scanList,
List<Precursor> precursors,
List<ParamGroup> products,
List<Peptide> peptide) |
Spectrum(ParamGroup params,
Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays,
String spotID,
SourceFile sourceFile,
ScanList scanList,
List<Precursor> precursors,
List<ParamGroup> products) |
Spectrum(ParamGroup params,
Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays,
String spotID,
SourceFile sourceFile,
ScanList scanList,
List<Precursor> precursors,
List<ParamGroup> products,
List<Peptide> peptide) |
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