Modifier and Type | Method and Description |
---|---|
ExperimentProtocol |
PrideXmlControllerImpl.getProtocol()
Get the protocol object
|
ExperimentProtocol |
MzTabControllerImpl.getProtocol()
Get the protocol object
|
Modifier and Type | Method and Description |
---|---|
static ExperimentProtocol |
PrideXmlTransformer.transformProtocol(uk.ac.ebi.pride.jaxb.model.Protocol rawProt)
transform protocol from pride xml to core data model.
|
static ExperimentProtocol |
MzTabTransformer.transformProtocol(SortedMap<Integer,uk.ac.ebi.pride.jmztab.model.SplitList<uk.ac.ebi.pride.jmztab.model.Param>> sampleProcession) |
Modifier and Type | Method and Description |
---|---|
ExperimentProtocol |
ExperimentMetaData.getProtocol() |
Modifier and Type | Method and Description |
---|---|
void |
ExperimentMetaData.setProtocol(ExperimentProtocol protocol) |
Constructor and Description |
---|
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol) |
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol,
List<SpectraData> spectraDatas) |
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol,
List<SpectraData> spectraDatas,
Map<Comparable,StudyVariable> studyVariables)
This controller is specially designed for mzTab files that contains Study Variables with description, etc.
|
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.