Package | Description |
---|---|
uk.ac.ebi.pride.utilities.data.controller.access | |
uk.ac.ebi.pride.utilities.data.controller.impl.ControllerImpl | |
uk.ac.ebi.pride.utilities.data.core |
Modifier and Type | Method and Description |
---|---|
Collection<FragmentIon> |
PeptideDataAccess.getFragmentIons(Comparable proteinId,
Comparable peptideId)
Get the fragment ions assigned to the peptide.
|
Modifier and Type | Method and Description |
---|---|
Collection<FragmentIon> |
AbstractDataAccessController.getFragmentIons(Comparable proteinId,
Comparable peptideId) |
Modifier and Type | Method and Description |
---|---|
List<FragmentIon> |
SpectrumIdentification.getFragmentation() |
List<FragmentIon> |
Peptide.getFragmentation() |
Modifier and Type | Method and Description |
---|---|
void |
SpectrumIdentification.setFragmentation(List<FragmentIon> fragmentation) |
Constructor and Description |
---|
SpectrumIdentification(Comparable id,
String name,
int chargeState,
double experimentalMassToCharge,
double calculatedMassToCharge,
double calculatedPI,
PeptideSequence peptideSequence,
int rank,
boolean passThreshold,
MassTable massTable,
Sample sample,
List<PeptideEvidence> peptideEvidenceList,
List<FragmentIon> fragmentation,
Score score,
Spectrum spectrum,
SpectraData spectraData)
Spectrum Identification Item
|
SpectrumIdentification(ParamGroup params,
Comparable id,
String name,
int chargeState,
double experimentalMassToCharge,
double calculatedMassToCharge,
double calculatedPI,
PeptideSequence peptideSequence,
int rank,
boolean passThreshold,
MassTable massTable,
Sample sample,
List<PeptideEvidence> peptideEvidenceList,
List<FragmentIon> fragmentation,
Score score,
Spectrum spectrum,
SpectraData spectraData)
Spectrum Identification Item
|
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.