Modifier and Type | Method and Description |
---|---|
List<InstrumentConfiguration> |
PrideXmlControllerImpl.getInstrumentConfigurations()
Get a list of instruments
|
List<InstrumentConfiguration> |
MzXmlControllerImpl.getInstrumentConfigurations()
Get a list of instrument configurations.
|
List<InstrumentConfiguration> |
MzTabControllerImpl.getInstrumentConfigurations() |
List<InstrumentConfiguration> |
MzMLControllerImpl.getInstrumentConfigurations()
Get a list of instrument configurations by checking the cache first
|
List<InstrumentConfiguration> |
MzDataControllerImpl.getInstrumentConfigurations()
Get a list of instrument configurations by checking the cache first
|
Modifier and Type | Method and Description |
---|---|
static InstrumentConfiguration |
MzMLTransformer.transformInstrumentConfiguration(uk.ac.ebi.jmzml.model.mzml.InstrumentConfiguration oldInstrument)
Convert instrument configuration
|
Modifier and Type | Method and Description |
---|---|
static List<InstrumentConfiguration> |
PrideXmlTransformer.transformInstrument(uk.ac.ebi.pride.jaxb.model.Instrument rawInstrument,
uk.ac.ebi.pride.jaxb.model.DataProcessing rawDataProcessing)
Transform an instrument from pride xml to core data model format.
|
static Collection<InstrumentConfiguration> |
MzTabTransformer.transformInstrument(Map<Integer,uk.ac.ebi.pride.jmztab.model.Instrument> oldInstruments) |
static List<InstrumentConfiguration> |
MzDataTransformer.transformInstrumentConfiguration(uk.ac.ebi.pride.tools.mzdata_parser.mzdata.model.InstrumentDescription oldInstrument)
Convert instrument configuration
|
static List<InstrumentConfiguration> |
MzMLTransformer.transformInstrumentConfigurationList(uk.ac.ebi.jmzml.model.mzml.InstrumentConfigurationList oldInstrumentList)
Convert instrument configuration list
|
static List<InstrumentConfiguration> |
MzXmlTransformer.transformMsInstrument(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.MsInstrument> rawInstrumentList) |
Modifier and Type | Method and Description |
---|---|
InstrumentConfiguration |
Scan.getInstrumentConfiguration() |
Modifier and Type | Method and Description |
---|---|
List<InstrumentConfiguration> |
MzGraphMetaData.getInstrumentConfigurations() |
Modifier and Type | Method and Description |
---|---|
void |
Scan.setInstrumentConfiguration(InstrumentConfiguration instrumentConfiguration) |
Modifier and Type | Method and Description |
---|---|
void |
MzGraphMetaData.setInstrumentConfigurations(List<InstrumentConfiguration> instrumentConfigurations) |
Constructor and Description |
---|
Scan(String spectrumRef,
String externalSpecRef,
SourceFile sourceFile,
InstrumentConfiguration instrumentConfiguration,
List<ParamGroup> scanWindows,
ParamGroup params)
Constructor
|
Constructor and Description |
---|
MzGraphMetaData(Comparable id,
String name,
List<ScanSetting> scanSettings,
List<InstrumentConfiguration> instrumentConfigurations,
List<DataProcessing> dataProcessings) |
MzGraphMetaData(ParamGroup params,
Comparable id,
String name,
List<ScanSetting> scanSettings,
List<InstrumentConfiguration> instrumentConfigurations,
List<DataProcessing> dataProcessings) |
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