Modifier and Type | Method and Description |
---|---|
List<Organization> |
PrideXmlControllerImpl.getOrganizationContacts() |
List<Organization> |
MzTabControllerImpl.getOrganizationContacts()
Return the List of Organizations
|
List<Organization> |
MzMLControllerImpl.getOrganizationContacts()
Get a list of Organization contacts
|
List<Organization> |
MzIdentMLControllerImpl.getOrganizationContacts()
Get a list of Organization Contacts
|
Modifier and Type | Method and Description |
---|---|
static Organization |
MzTabTransformer.transformContactToOrganization(uk.ac.ebi.pride.jmztab.model.Contact contact) |
static Organization |
MzIdentMLTransformer.transformToOrganization(uk.ac.ebi.jmzidml.model.mzidml.Organization oldOrganization) |
Modifier and Type | Method and Description |
---|---|
static List<Organization> |
MzIdentMLTransformer.transformAffiliationToOrganization(List<uk.ac.ebi.jmzidml.model.mzidml.Affiliation> oldAffiliations) |
static List<Organization> |
PrideXmlTransformer.transformContactToOrganization(uk.ac.ebi.pride.jaxb.model.Admin rawAdmin)
Transform a list of contacts from person contact
|
static List<Organization> |
MzTabTransformer.transformContactToOrganization(Map<Integer,uk.ac.ebi.pride.jmztab.model.Contact> contacts) |
static List<Organization> |
MzMLTransformer.transformFileDescriptionOrganization(uk.ac.ebi.jmzml.model.mzml.FileDescription rawFileDescription)
Method to transform FileDescription in the MzMl file to an Organization Objet List
|
static List<Organization> |
MzIdentMLTransformer.transformToOrganization(List<uk.ac.ebi.jmzidml.model.mzidml.Organization> oldOrganizations) |
Modifier and Type | Method and Description |
---|---|
Organization |
Organization.getParentOrganization()
The containing organization (the university or business which a lab belongs to, etc.)
|
Modifier and Type | Method and Description |
---|---|
List<Organization> |
Person.getAffiliation() |
List<Organization> |
ExperimentMetaData.getOrganizations() |
Modifier and Type | Method and Description |
---|---|
void |
Organization.setParentOrganization(Organization parentOrganization) |
Modifier and Type | Method and Description |
---|---|
void |
Person.setAffiliation(List<Organization> affiliation) |
void |
ExperimentMetaData.setOrganizations(List<Organization> organizations) |
Constructor and Description |
---|
Organization(Comparable id,
String name,
String mail,
Organization parentOrganization) |
Organization(ParamGroup params,
Comparable id,
String name,
Organization parentOrganization,
String mail) |
Constructor and Description |
---|
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol) |
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol,
List<SpectraData> spectraDatas) |
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol,
List<SpectraData> spectraDatas,
Map<Comparable,StudyVariable> studyVariables)
This controller is specially designed for mzTab files that contains Study Variables with description, etc.
|
Person(Comparable id,
String name,
String lastname,
String firstname,
String midInitials,
List<Organization> affiliation,
String contactInfo) |
Person(ParamGroup params,
Comparable id,
String name,
String lastname,
String firstname,
String midInitials,
List<Organization> affiliation,
String contactInfo) |
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