Modifier and Type | Method and Description |
---|---|
static Map<PeptideEvidence,List<Peptide>> |
DataAccessUtilities.getPeptideEvidence(List<Peptide> peptides)
Get peptide Evidence for a Lis of Peptide Identifications
|
Modifier and Type | Method and Description |
---|---|
Collection<PeptideEvidence> |
PeptideDataAccess.getPeptideEvidences(Comparable proteinId,
Comparable peptideId)
Get all Peptide Evidence for a Peptide Identification
|
Collection<PeptideEvidence> |
QuantDataAccess.getQuantPeptideEvidences(Comparable proteinId,
Comparable peptideId)
Get all Peptide Evidence for a Peptide Identification
|
Modifier and Type | Method and Description |
---|---|
Collection<PeptideEvidence> |
AbstractDataAccessController.getPeptideEvidences(Comparable proteinId,
Comparable peptideId) |
Collection<PeptideEvidence> |
AbstractDataAccessController.getQuantPeptideEvidences(Comparable proteinId,
Comparable peptideId) |
Modifier and Type | Method and Description |
---|---|
PeptideEvidence |
Peptide.getPeptideEvidence() |
Modifier and Type | Method and Description |
---|---|
List<PeptideEvidence> |
SpectrumIdentification.getPeptideEvidenceList() |
List<PeptideEvidence> |
Peptide.getPeptideEvidenceList() |
Modifier and Type | Method and Description |
---|---|
void |
Peptide.setPeptideEvidence(PeptideEvidence peptideEvidence) |
Modifier and Type | Method and Description |
---|---|
void |
SpectrumIdentification.setPeptideEvidenceList(List<PeptideEvidence> peptideEvidenceList) |
Constructor and Description |
---|
Peptide(PeptideEvidence peptideEvidence,
SpectrumIdentification spectrumIdentification) |
QuantPeptide(PeptideEvidence peptideEvidence,
SpectrumIdentification spectrumIdentification,
QuantScore quantScore) |
Constructor and Description |
---|
SpectrumIdentification(Comparable id,
String name,
int chargeState,
double experimentalMassToCharge,
double calculatedMassToCharge,
double calculatedPI,
PeptideSequence peptideSequence,
int rank,
boolean passThreshold,
MassTable massTable,
Sample sample,
List<PeptideEvidence> peptideEvidenceList,
List<FragmentIon> fragmentation,
Score score,
Spectrum spectrum,
SpectraData spectraData)
Spectrum Identification Item
|
SpectrumIdentification(ParamGroup params,
Comparable id,
String name,
int chargeState,
double experimentalMassToCharge,
double calculatedMassToCharge,
double calculatedPI,
PeptideSequence peptideSequence,
int rank,
boolean passThreshold,
MassTable massTable,
Sample sample,
List<PeptideEvidence> peptideEvidenceList,
List<FragmentIon> fragmentation,
Score score,
Spectrum spectrum,
SpectraData spectraData)
Spectrum Identification Item
|
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.