Uses of Class
uk.ac.ebi.pride.utilities.data.core.PeptideSequence

Packages that use PeptideSequence

Package	Description
uk.ac.ebi.pride.utilities.data.core

Uses of PeptideSequence in uk.ac.ebi.pride.utilities.data.core

Methods in uk.ac.ebi.pride.utilities.data.core that return PeptideSequence

Modifier and Type	Method and Description
PeptideSequence	SpectrumIdentification.getPeptideSequence()
PeptideSequence	PeptideEvidence.getPeptideSequence()
PeptideSequence	Peptide.getPeptideSequence()

Methods in uk.ac.ebi.pride.utilities.data.core that return types with arguments of type PeptideSequence

Modifier and Type	Method and Description
List<PeptideSequence>	Protein.getPeptidesSequence()

Methods in uk.ac.ebi.pride.utilities.data.core with parameters of type PeptideSequence

Modifier and Type	Method and Description
void	SpectrumIdentification.setPeptideSequence(PeptideSequence peptideSequence)
void	PeptideEvidence.setPeptideSequence(PeptideSequence peptideSequence)

Constructors in uk.ac.ebi.pride.utilities.data.core with parameters of type PeptideSequence

Constructor and Description
PeptideEvidence(ParamGroup params, String id, String name, Integer startPosition, Integer endPosition, boolean decoy, PeptideSequence peptideSequence, DBSequence dbSequence)
PeptideEvidence(String id, String name, Integer startPosition, Integer endPosition, Boolean decoy, PeptideSequence peptideSequence, DBSequence dbSequence)
SpectrumIdentification(Comparable id, String name, int chargeState, double experimentalMassToCharge, double calculatedMassToCharge, double calculatedPI, PeptideSequence peptideSequence, int rank, boolean passThreshold, MassTable massTable, Sample sample, List<PeptideEvidence> peptideEvidenceList, List<FragmentIon> fragmentation, Score score, Spectrum spectrum, SpectraData spectraData) Spectrum Identification Item
SpectrumIdentification(ParamGroup params, Comparable id, String name, int chargeState, double experimentalMassToCharge, double calculatedMassToCharge, double calculatedPI, PeptideSequence peptideSequence, int rank, boolean passThreshold, MassTable massTable, Sample sample, List<PeptideEvidence> peptideEvidenceList, List<FragmentIon> fragmentation, Score score, Spectrum spectrum, SpectraData spectraData) Spectrum Identification Item