Package | Description |
---|---|
uk.ac.ebi.pride.utilities.data.controller | |
uk.ac.ebi.pride.utilities.data.controller.impl.Transformer | |
uk.ac.ebi.pride.utilities.data.core |
Modifier and Type | Method and Description |
---|---|
static Double |
DataAccessUtilities.getSelectedIonCharge(Precursor precursor,
int index)
Get the ion charge for a selected ion.
|
static Double |
DataAccessUtilities.getSelectedIonIntensity(Precursor precursor,
int index)
Get the ion intensity value for a selected ion.
|
static Double |
DataAccessUtilities.getSelectedIonMz(Precursor precursor,
int index)
Get the ion m/z value for a selected ion.
|
Modifier and Type | Method and Description |
---|---|
static Integer |
DataAccessUtilities.getPrecursorCharge(List<Precursor> precursors) |
Modifier and Type | Method and Description |
---|---|
static Precursor |
PrideXmlTransformer.transformPrecursor(uk.ac.ebi.pride.jaxb.model.Precursor rawPrecursor)
transform precursors from pride xml to core data model
Note: In MzData schema, there are experimentRef, this is not included
in pride xml schema.
|
Modifier and Type | Method and Description |
---|---|
static List<Precursor> |
PrideXmlTransformer.transformPrecursorList(uk.ac.ebi.pride.jaxb.model.PrecursorList rawPrecursors)
Convert precursor list
|
Modifier and Type | Method and Description |
---|---|
List<Precursor> |
Spectrum.getPrecursors() |
Modifier and Type | Method and Description |
---|---|
void |
Spectrum.setPrecursors(List<Precursor> precursors) |
Constructor and Description |
---|
Spectrum(Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays,
String spotID,
SourceFile sourceFile,
ScanList scanList,
List<Precursor> precursors,
List<ParamGroup> products,
List<Peptide> peptide) |
Spectrum(ParamGroup params,
Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays,
String spotID,
SourceFile sourceFile,
ScanList scanList,
List<Precursor> precursors,
List<ParamGroup> products) |
Spectrum(ParamGroup params,
Comparable id,
String name,
int index,
DataProcessing defaultDataProcessing,
int defaultArrayLength,
List<BinaryDataArray> binaryDataArrays,
String spotID,
SourceFile sourceFile,
ScanList scanList,
List<Precursor> precursors,
List<ParamGroup> products,
List<Peptide> peptide) |
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.