Modifier and Type | Method and Description |
---|---|
static QuantPeptide |
DataAccessUtilities.getQuantPeptide(Protein ident,
int index)
This is convenient method for accessing peptide.
|
Modifier and Type | Method and Description |
---|---|
QuantPeptide |
QuantDataAccess.getQuantPeptideByIndex(Comparable proteinId,
Comparable peptideId)
This is convenient method for accessing peptide.
|
Modifier and Type | Method and Description |
---|---|
QuantPeptide |
AbstractDataAccessController.getQuantPeptideByIndex(Comparable proteinId,
Comparable peptideId) |
Modifier and Type | Method and Description |
---|---|
static QuantPeptide |
MzTabTransformer.transformQuantPeptide(uk.ac.ebi.pride.jmztab.model.Peptide rawPeptide,
DBSequence dbSequence,
Comparable index,
uk.ac.ebi.pride.jmztab.model.Metadata metadata)
Transform quantitative peptide from pride xml to core data model.
|
Modifier and Type | Method and Description |
---|---|
List<QuantPeptide> |
Protein.getQuantPeptides() |
Constructor and Description |
---|
Protein(ParamGroup params,
Comparable id,
String name,
DBSequence dbSequence,
boolean passThreshold,
List<Peptide> peptides,
Score score,
double threshold,
double sequenceCoverage,
Gel gel,
QuantScore quantScore,
List<QuantPeptide> quantPeptides)
Constructor for Protein Entity Identification with CVParams and Quantitation Score based on mzTab model
|
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.