Package | Description |
---|---|
uk.ac.ebi.pride.utilities.data.controller.access | |
uk.ac.ebi.pride.utilities.data.controller.impl.ControllerImpl | |
uk.ac.ebi.pride.utilities.data.core |
Modifier and Type | Method and Description |
---|---|
QuantScore |
QuantDataAccess.getPeptideQuantStudyData(Comparable proteinID,
Comparable peptideId)
Retrieve the Quantitation Score of peptides in Study Variables
|
QuantScore |
QuantDataAccess.getProteinQuantStudyData(Comparable proteinId)
Return the Quantitation Score for Study variables approach.
|
QuantScore |
QuantDataAccess.getQuantPeptideQuantScore(Comparable proteinId,
Comparable peptideId)
Get peptide score generated by search engine.
|
Modifier and Type | Method and Description |
---|---|
QuantScore |
AbstractDataAccessController.getPeptideQuantStudyData(Comparable proteinId,
Comparable peptideId) |
QuantScore |
AbstractDataAccessController.getProteinQuantStudyData(Comparable proteinId) |
QuantScore |
AbstractDataAccessController.getQuantPeptideQuantScore(Comparable proteinId,
Comparable peptideId) |
Modifier and Type | Method and Description |
---|---|
QuantScore |
QuantPeptide.getQuantScore() |
QuantScore |
Protein.getQuantScore() |
QuantScore |
Peptide.getQuantScore() |
Modifier and Type | Method and Description |
---|---|
void |
QuantPeptide.setQuantScore(QuantScore quantScore) |
void |
Protein.setQuantScore(QuantScore quantScore) |
Constructor and Description |
---|
Protein(ParamGroup params,
Comparable id,
String name,
DBSequence dbSequence,
boolean passThreshold,
List<Peptide> peptides,
Score score,
double threshold,
double sequenceCoverage,
Gel gel,
QuantScore quantScore)
Constructor for Protein Entity Identification with CVParams and Quantitation Score based on mzTab model
|
Protein(ParamGroup params,
Comparable id,
String name,
DBSequence dbSequence,
boolean passThreshold,
List<Peptide> peptides,
Score score,
double threshold,
double sequenceCoverage,
Gel gel,
QuantScore quantScore,
List<QuantPeptide> quantPeptides)
Constructor for Protein Entity Identification with CVParams and Quantitation Score based on mzTab model
|
QuantPeptide(PeptideEvidence peptideEvidence,
SpectrumIdentification spectrumIdentification,
QuantScore quantScore) |
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.