Package | Description |
---|---|
uk.ac.ebi.pride.utilities.data.controller.impl.ControllerImpl | |
uk.ac.ebi.pride.utilities.data.controller.impl.Transformer | |
uk.ac.ebi.pride.utilities.data.core |
Modifier and Type | Method and Description |
---|---|
List<Reference> |
PrideXmlControllerImpl.getReferences()
Get a list of references
|
List<Reference> |
MzTabControllerImpl.getReferences()
Get a list of references
|
List<Reference> |
MzIdentMLControllerImpl.getReferences()
Get a list of references
|
Modifier and Type | Method and Description |
---|---|
static List<Reference> |
PrideXmlTransformer.transformReferences(List<uk.ac.ebi.pride.jaxb.model.Reference> rawReferences)
Transform references from pride xml format to core data model format
|
static Collection<Reference> |
MzTabTransformer.transformReferences(Map<Integer,uk.ac.ebi.pride.jmztab.model.Publication> publications) |
static List<Reference> |
MzIdentMLTransformer.transformToReference(Iterator<uk.ac.ebi.jmzidml.model.mzidml.BibliographicReference> it) |
Modifier and Type | Method and Description |
---|---|
List<Reference> |
ExperimentMetaData.getReferences() |
Modifier and Type | Method and Description |
---|---|
void |
ExperimentMetaData.setReferences(List<Reference> references) |
Constructor and Description |
---|
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol) |
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol,
List<SpectraData> spectraDatas) |
ExperimentMetaData(ParamGroup params,
Comparable id,
String name,
String version,
String shortLabel,
List<Sample> samples,
List<Software> softwares,
List<Person> persons,
List<SourceFile> sourceFiles,
Provider provider,
List<Organization> organizations,
List<Reference> references,
Date creationDate,
Date publicDate,
ExperimentProtocol protocol,
List<SpectraData> spectraDatas,
Map<Comparable,StudyVariable> studyVariables)
This controller is specially designed for mzTab files that contains Study Variables with description, etc.
|
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.