Modifier and Type | Method and Description |
---|---|
SearchDataBase |
ProteinDataAccess.getSearchDatabase(Comparable proteinId)
Get the search database of a identification
|
Modifier and Type | Method and Description |
---|---|
SearchDataBase |
CachedDataAccessController.getSearchDatabase(Comparable proteinId)
Get search database using identification id
|
SearchDataBase |
AbstractDataAccessController.getSearchDatabase(Comparable proteinId) |
Modifier and Type | Method and Description |
---|---|
List<SearchDataBase> |
MzTabControllerImpl.getSearchDataBases() |
List<SearchDataBase> |
MzIdentMLControllerImpl.getSearchDataBases()
Get the List of Databases used in the Experiment
|
Modifier and Type | Method and Description |
---|---|
static List<SearchDataBase> |
MzTabTransformer.transformDatabases(Set<uk.ac.ebi.pride.utilities.util.Tuple<String,String>> oldDatabases) |
static List<SearchDataBase> |
MzIdentMLTransformer.transformToSearchDataBase(List<uk.ac.ebi.jmzidml.model.mzidml.SearchDatabase> oldSearchDatabases) |
Modifier and Type | Method and Description |
---|---|
SearchDataBase |
DBSequence.getSearchDataBase() |
Modifier and Type | Method and Description |
---|---|
List<SearchDataBase> |
IdentificationMetaData.getSearchDataBases() |
Modifier and Type | Method and Description |
---|---|
void |
DBSequence.setSearchDataBase(SearchDataBase searchDataBase) |
Modifier and Type | Method and Description |
---|---|
void |
IdentificationMetaData.setSearchDataBases(List<SearchDataBase> searchDataBases) |
Constructor and Description |
---|
DBSequence(ParamGroup params,
Comparable id,
String name,
int length,
String accession,
SearchDataBase searchDataBase,
String sequence,
String accessionVersion,
String spliceIsoform) |
DBSequence(String accession,
SearchDataBase searchDataBase,
String accessionVersion,
String spliceIsoform) |
Constructor and Description |
---|
IdentificationMetaData(Comparable id,
String name,
List<SpectrumIdentificationProtocol> spectrumIdentificationProtocols,
Protocol proteinDetectionProtocol,
List<SearchDataBase> searchDataBases) |
IdentificationMetaData(ParamGroup params,
Comparable id,
String name,
List<SpectrumIdentificationProtocol> spectrumIdentificationProtocols,
Protocol proteinDetectionProtocol,
List<SearchDataBase> searchDataBases) |
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.