Modifier and Type | Method and Description |
---|---|
static UserParam |
PrideXmlTransformer.transformUserParam(uk.ac.ebi.pride.jaxb.model.UserParam rawUserParam)
Transform a user parameter from pride xml format to core data model format.
|
Modifier and Type | Method and Description |
---|---|
static List<UserParam> |
PrideXmlTransformer.transformUserParams(List<uk.ac.ebi.pride.jaxb.model.UserParam> rawUserParams)
Convert a list of user params
|
Modifier and Type | Method and Description |
---|---|
List<UserParam> |
ParamGroup.getUserParams() |
Modifier and Type | Method and Description |
---|---|
void |
ParamGroup.addUserParam(UserParam up) |
void |
ParamGroup.removeUserParam(UserParam up) |
Modifier and Type | Method and Description |
---|---|
void |
ParamGroup.addUserParams(List<UserParam> ups) |
void |
ParamGroup.removeUserParams(List<UserParam> ups) |
void |
ParamGroup.setUserParams(List<UserParam> ups) |
Constructor and Description |
---|
ParamGroup(CvParam cvParam,
UserParam userParam) |
Constructor and Description |
---|
ParamGroup(List<CvParam> cvParams,
List<UserParam> userParams)
Constructor
|
PeptideSequence(List<CvParam> cvParams,
List<UserParam> userParams,
String id,
String name,
String sequence,
List<Modification> modifications) |
PeptideSequence(List<CvParam> cvParams,
List<UserParam> userParams,
String id,
String name,
String sequence,
List<Modification> modifications,
List<SubstitutionModification> substitutionModifications) |
Reference(List<CvParam> cvParams,
List<UserParam> userParams,
String id,
String name,
String fullReference) |
Reference(List<CvParam> cvParams,
List<UserParam> userParams,
String id,
String name,
String doi,
String title,
String pages,
String issue,
String volume,
String year,
String editor,
String publisher,
String publication,
String authors,
String fullReference) |
Modifier and Type | Method and Description |
---|---|
protected String |
MzIdentMLMzTabConverter.getDatabaseName(List<CvParam> databaseName,
List<UserParam> userParam) |
Modifier and Type | Method and Description |
---|---|
static UserParam |
MzTabUtils.convertStringToUserParam(String value) |
Modifier and Type | Method and Description |
---|---|
static List<UserParam> |
MzTabUtils.convertStringListToUserParam(List<String> settingList) |
Modifier and Type | Method and Description |
---|---|
static uk.ac.ebi.pride.jmztab.model.CVParam |
MzTabUtils.convertUserParamToCVParam(UserParam param)
This function takes the value of a UserParam and returns a corresponding CVParam
|
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