public final class MzIdentMLUtils extends Object
Modifier and Type | Method and Description |
---|---|
static boolean |
containMGFTitleCVterm(List<uk.ac.ebi.jmzidml.model.mzidml.CvParam> listCVParam) |
static CvParam |
getFileFormatMGFTitle()
This CvParam override the current File format CVparam for those files that are native wiff but are mgf using title reference.
|
static List<uk.ac.ebi.pride.jmztab.utils.convert.SearchEngineParam> |
getSearchEngineCvTermReferences(List<CvParam> cvParams)
Search and find a list of search engine types from input parameter group.
|
static Constants.SpecIdFormat |
getSpectraDataIdFormat(SpectraData spectraData) |
static Constants.SpecIdFormat |
getSpectraDataIdFormat(uk.ac.ebi.jmzidml.model.mzidml.SpectraData spectraData) |
static String |
getSpectrumId(uk.ac.ebi.jmzidml.model.mzidml.SpectraData spectraData,
String spectrumID) |
static CvParam |
getSpectrumIdFormatMGFTitle() |
static boolean |
isSpectraDataReferencedByTitle(uk.ac.ebi.jmzidml.model.mzidml.SpectraData spectraData) |
static Comparable |
MGFTitleCVtermValue(List<uk.ac.ebi.jmzidml.model.mzidml.CvParam> cvParams) |
static List<String> |
validateMzIdentMLSchema(File resultFile) |
public static Constants.SpecIdFormat getSpectraDataIdFormat(SpectraData spectraData)
public static Constants.SpecIdFormat getSpectraDataIdFormat(uk.ac.ebi.jmzidml.model.mzidml.SpectraData spectraData)
public static String getSpectrumId(uk.ac.ebi.jmzidml.model.mzidml.SpectraData spectraData, String spectrumID)
public static List<String> validateMzIdentMLSchema(File resultFile) throws SAXException, FileNotFoundException, URISyntaxException, MalformedURLException
public static List<uk.ac.ebi.pride.jmztab.utils.convert.SearchEngineParam> getSearchEngineCvTermReferences(List<CvParam> cvParams)
public static boolean containMGFTitleCVterm(List<uk.ac.ebi.jmzidml.model.mzidml.CvParam> listCVParam)
public static Comparable MGFTitleCVtermValue(List<uk.ac.ebi.jmzidml.model.mzidml.CvParam> cvParams)
public static boolean isSpectraDataReferencedByTitle(uk.ac.ebi.jmzidml.model.mzidml.SpectraData spectraData)
public static CvParam getFileFormatMGFTitle()
public static CvParam getSpectrumIdFormatMGFTitle()
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