uk.ac.ebi.pride.utilities.data.utils

Class PRIDEUtils

java.lang.Object

uk.ac.ebi.pride.utilities.data.utils.PRIDEUtils

public class PRIDEUtils
extends Object

Author:

Yasset Perez-Riverol, Rui Wang

Field Summary

Fields

Modifier and Type	Field and Description
static String	DUP_PROTEINS_BEST_SEARCH_ENGINES_SCORE
static String	DUP_PROTEINS_HAD_QUANT
static String	DUP_PROTEINS_SEARCH_ENGINES
static String	DUP_PROTEINS_SEARCH_ENGINES_SCORES
static String	NUM_MERGE_PROTEINS

Constructor Summary

Constructors

Constructor and Description
PRIDEUtils()

Method Summary

Methods

Modifier and Type	Method and Description
static CvParam	convertSoftwareNameToCvPram(String name, String version) Conversion from PRIDE Software to CVParam using a general CVTerm like Analysis Software

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DUP_PROTEINS_SEARCH_ENGINES

public static final String DUP_PROTEINS_SEARCH_ENGINES

See Also:

Constant Field Values

DUP_PROTEINS_SEARCH_ENGINES_SCORES

public static final String DUP_PROTEINS_SEARCH_ENGINES_SCORES

See Also:

Constant Field Values

DUP_PROTEINS_BEST_SEARCH_ENGINES_SCORE

public static final String DUP_PROTEINS_BEST_SEARCH_ENGINES_SCORE

See Also:

Constant Field Values

DUP_PROTEINS_HAD_QUANT

public static final String DUP_PROTEINS_HAD_QUANT

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Constant Field Values

NUM_MERGE_PROTEINS

public static final String NUM_MERGE_PROTEINS

See Also:

Constant Field Values

Constructor Detail

PRIDEUtils

public PRIDEUtils()

Method Detail

convertSoftwareNameToCvPram

public static CvParam convertSoftwareNameToCvPram(String name,
                                  String version)

Conversion from PRIDE Software to CVParam using a general CVTerm like Analysis Software

Parameters:

name - Generic name of a Software

version - Software Version

Returns:

Return the generic CV term for Software