public class ModReader extends Object
Modifier | Constructor and Description |
---|---|
protected |
ModReader() |
Modifier and Type | Method and Description |
---|---|
static ModReader |
getInstance() |
PTM |
getPTMbyAccession(String accession)
PTM accession
|
List<PTM> |
getPTMListByAvgDeltaMass(Double delta) |
List<PTM> |
getPTMListByEqualName(String name)
Return all PTMs with the same name.
|
List<PTM> |
getPTMListByMonoDeltaMass(Double delta) |
List<PTM> |
getPTMListByPatternDescription(String descriptionPattern)
Description pattern to found PTMs with the pattern
|
List<PTM> |
getPTMListByPatternName(String namePattern)
String pattern present in the name.
|
List<PTM> |
getPTMListBySpecificity(Specificity specificity)
Specificity to filter all the identifications in the
|
public static ModReader getInstance()
public PTM getPTMbyAccession(String accession)
accession
- public List<PTM> getPTMListByPatternName(String namePattern)
namePattern
- public List<PTM> getPTMListBySpecificity(Specificity specificity)
specificity
- public List<PTM> getPTMListByPatternDescription(String descriptionPattern)
descriptionPattern
- public List<PTM> getPTMListByEqualName(String name)
name
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