uk.ac.ebi.pridemod.io.pridemod.model

Class PrideModification

java.lang.Object

uk.ac.ebi.pridemod.io.pridemod.model.PrideModification

All Implemented Interfaces:

Serializable, PrideModObject

public class PrideModification
extends Object
implements Serializable, PrideModObject

Java class for anonymous complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType>
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element ref="{}unimod_mappings"/>
         <element ref="{}psi_modifications"/>
       </sequence>
       <attribute name="biological_significance" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="diff_mono" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="title" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
     </restriction>
   </complexContent>
 </complexType>
 

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected BigInteger	biologicalSignificance
protected BigDecimal	diffMono
protected BigInteger	id
protected PsiModifications	psiModifications
protected String	title
protected UnimodMappings	unimodMappings

Constructor Summary

Constructors

Constructor and Description
PrideModification()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	compareId(int id)
boolean	compareMono(double mass)
BigInteger	getBiologicalSignificance() Gets the value of the biologicalSignificance property.
BigDecimal	getDiffMono() Gets the value of the diffMono property.
BigInteger	getId() Gets the value of the id property.
String	getPsiId() This function returns the id for a given PRIDE Mod
PsiModifications	getPsiModifications() Gets the value of the psiModifications property.
String	getPsiName()
List<Specificity>	getSpecificityList()
String	getTitle() Gets the value of the title property.
UnimodMappings	getUnimodMappings() Gets the value of the unimodMappings property.
boolean	isSpecificity(String specificity)
void	setBiologicalSignificance(BigInteger value) Sets the value of the biologicalSignificance property.
void	setDiffMono(BigDecimal value) Sets the value of the diffMono property.
void	setId(BigInteger value) Sets the value of the id property.
void	setPsiModifications(PsiModifications value) Sets the value of the psiModifications property.
void	setTitle(String value) Sets the value of the title property.
void	setUnimodMappings(UnimodMappings value) Sets the value of the unimodMappings property.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

unimodMappings

protected UnimodMappings unimodMappings

psiModifications

protected PsiModifications psiModifications

biologicalSignificance

protected BigInteger biologicalSignificance

diffMono

protected BigDecimal diffMono

id

protected BigInteger id

title

protected String title

Constructor Detail

PrideModification

public PrideModification()

Method Detail

getUnimodMappings

public UnimodMappings getUnimodMappings()

Gets the value of the unimodMappings property.

Returns:

possible object is UnimodMappings

setUnimodMappings

public void setUnimodMappings(UnimodMappings value)

Sets the value of the unimodMappings property.

Parameters:

value - allowed object is UnimodMappings

getPsiModifications

public PsiModifications getPsiModifications()

Gets the value of the psiModifications property.

Returns:

possible object is PsiModifications

setPsiModifications

public void setPsiModifications(PsiModifications value)

Sets the value of the psiModifications property.

Parameters:

value - allowed object is PsiModifications

getBiologicalSignificance

public BigInteger getBiologicalSignificance()

Gets the value of the biologicalSignificance property.

Returns:

possible object is BigInteger

setBiologicalSignificance

public void setBiologicalSignificance(BigInteger value)

Sets the value of the biologicalSignificance property.

Parameters:

value - allowed object is BigInteger

getDiffMono

public BigDecimal getDiffMono()

Gets the value of the diffMono property.

Returns:

possible object is BigDecimal

setDiffMono

public void setDiffMono(BigDecimal value)

Sets the value of the diffMono property.

Parameters:

value - allowed object is BigDecimal

getId

public BigInteger getId()

Gets the value of the id property.

Returns:

possible object is BigInteger

setId

public void setId(BigInteger value)

Sets the value of the id property.

Parameters:

value - allowed object is BigInteger

getTitle

public String getTitle()

Gets the value of the title property.

Returns:

possible object is String

setTitle

public void setTitle(String value)

Sets the value of the title property.

Parameters:

value - allowed object is String

compareMono

public boolean compareMono(double mass)

compareId

public boolean compareId(int id)

isSpecificity

public boolean isSpecificity(String specificity)

getSpecificityList

public List<Specificity> getSpecificityList()

getPsiName

public String getPsiName()

getPsiId

public String getPsiId()

This function returns the id for a given PRIDE Mod

Returns: