Package | Description |
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uk.ac.ebi.pridemod.io.slimmod.model | |
uk.ac.ebi.pridemod.model |
Modifier and Type | Method and Description |
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SlimModCollection |
SlimModCollection.getbySpecificity(Specificity.AminoAcid specificity)
This method return an SlimModCollection object, a list of the slim modifications that
contain an specific specificity in the list of possible specificities.
|
SlimModCollection |
SlimModCollection.getbySpecificity(Specificity.AminoAcid specificity,
double mass,
double difference)
This method allow users to obtain the slim modification filtering with a delta mass
a possible error (difference) and one specificity in the list of the possible
specificities for each modification.
|
boolean |
SlimModification.isSpecificity(Specificity.AminoAcid specificity)
Check if a given AminoAcid is part of the specificity of this SlimModification.
|
boolean |
SlimModification.isSpecificity(Specificity.AminoAcid specificity,
double mass,
double difference)
Check if a given AminoAcid is part of the specificity of this SlimModification,
but only perform this check if the delta mass of this SlimModification is with
the specified difference of the specified mass.
|
Modifier and Type | Method and Description |
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Specificity.AminoAcid |
Specificity.getName()
Get Amino Acid Position
|
static Specificity.AminoAcid |
Specificity.parseAminoAcid(String s)
Convert an Amino acids in the one chacter representation to the AminoAcid
representation.
|
static Specificity.AminoAcid |
Specificity.AminoAcid.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static Specificity.AminoAcid[] |
Specificity.AminoAcid.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
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void |
Specificity.setName(Specificity.AminoAcid name)
Set Amino Acid Position
|
Constructor and Description |
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Specificity(Specificity.AminoAcid aminoacid,
Specificity.Position position)
Constructor to init the Specificity with aminoacid and position
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