Package | Description |
---|---|
uk.ac.ebi.pridemod | |
uk.ac.ebi.pridemod.controller | |
uk.ac.ebi.pridemod.io.pridemod.model | |
uk.ac.ebi.pridemod.io.slimmod.model | |
uk.ac.ebi.pridemod.model |
Modifier and Type | Method and Description |
---|---|
List<PTM> |
ModReader.getPTMListBySpecificity(Specificity specificity)
Specificity to filter all the identifications in the
|
Modifier and Type | Method and Description |
---|---|
List<PTM> |
DataAccessController.getPTMListBySpecificity(Specificity specificity)
Specificity to filter all the identifications in the
|
List<PTM> |
AbstractDataAccessController.getPTMListBySpecificity(Specificity specificity) |
Modifier and Type | Method and Description |
---|---|
List<Specificity> |
PrideModification.getSpecificityList() |
Modifier and Type | Method and Description |
---|---|
List<Specificity> |
SlimModification.getSpecificityCollection()
Get a collection of possible specificities of the current modification.
|
Modifier and Type | Method and Description |
---|---|
void |
SlimModification.setSpecificityCollection(List<Specificity> specificityCollection)
Set a collection of possible specificities of the current modification.
|
Constructor and Description |
---|
SlimModification(String idPsiMod,
double deltaMass,
int idUnimod,
String psiModDesc,
String shortNamePsiMod,
List<Specificity> specificityCollection)
Constructor of the Slim Modification Class using as a parameters all attributes
of the class.
|
Modifier and Type | Method and Description |
---|---|
List<Specificity> |
PTM.getSpecificityCollection()
Return the List of AminoAcid Specificity.
|
List<Specificity> |
AbstractPTM.getSpecificityCollection() |
Constructor and Description |
---|
AbstractPTM(String accession,
String name,
String description,
Double monoDeltaMass,
Double averageDeltaMass,
List<Specificity> specificityList,
String formula)
Contructor with all the fields for a general modification
|
PRIDEModPTM(String accession,
String name,
String description,
Double monoDeltaMass,
Double averageDeltaMass,
List<Specificity> specificityList,
Comparable unimodReference,
String formula)
Contructor with all the fields for a general modification
|
PSIModPTM(String accession,
String name,
String description,
Double monoDeltaMass,
Double averageDeltaMass,
List<Specificity> specificityList,
String formula,
List<String> synonyms,
String source,
List<Comparable> parentPTMList,
boolean obsolete) |
UniModPTM(String accession,
String name,
String description,
Double monoDeltaMass,
Double averageDeltaMass,
List<Specificity> specificityList,
String formula)
Contructor with all the fields for a general modification
|
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