All Classes
AbstractFilter
AbstractProteinInference
CvScore
CVUtilities
CVUtilities.CVs
DataImportController
FDRComputableByDecoys
FDRUtilities
FilterComparator
FilterType
FilterUtilities
InferenceProteinGroup
IntermediateGroup
IntermediatePeptide
IntermediatePeptideComparator
IntermediatePeptideSpectrumMatch
IntermediateProtein
IntermediatePSMComparator
IntermediateStructure
IntermediateStructureCreator
IntermediateStructureCreatorWorkerThread
OccamsRazorInference
OccamsRazorWorkerThread
PeptideModeller
PeptideNrPSMsFilter
PeptideScoring
PeptideScoringUseBestPSM
PIAModeller
PrideImportController
PrideImportController.InputFileType
PrideIntermediatePeptideSpectrumMatch
PrideIntermediateProtein
PrideUtilities
ProteinAccessionFilter
ProteinModeller
ProteinNrPSMsFilter
ProteinScoring
ProteinScoringAdditive
ProteinScoringMultiplicative
PSMAccessionsFilter
PSMDecoyFilter
PSMModeller
PSMQValueFilter
PSMScoreFilter
ReportAllInference
ScoreUtilities
ScoringItemType