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Hierarchy For All Packages
Package Hierarchies:
uk.ac.ebi.pride.utilities.pia.intermediate
,
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl
,
uk.ac.ebi.pride.utilities.pia.modeller
,
uk.ac.ebi.pride.utilities.pia.modeller.fdr
,
uk.ac.ebi.pride.utilities.pia.modeller.filter
,
uk.ac.ebi.pride.utilities.pia.modeller.filter.peptide
,
uk.ac.ebi.pride.utilities.pia.modeller.filter.protein
,
uk.ac.ebi.pride.utilities.pia.modeller.filter.psm
,
uk.ac.ebi.pride.utilities.pia.modeller.peptide
,
uk.ac.ebi.pride.utilities.pia.modeller.protein
,
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference
,
uk.ac.ebi.pride.utilities.pia.modeller.psm
,
uk.ac.ebi.pride.utilities.pia.modeller.scores
,
uk.ac.ebi.pride.utilities.pia.modeller.scores.peptide
,
uk.ac.ebi.pride.utilities.pia.modeller.scores.protein
,
uk.ac.ebi.pride.utilities.pia.modeller.scores.psm
,
uk.ac.ebi.pride.utilities.pia.psisupport
Class Hierarchy
java.lang.
Object
uk.ac.ebi.pride.utilities.pia.modeller.filter.
AbstractFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.peptide.
PeptideNrPSMsFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.protein.
ProteinAccessionFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.protein.
ProteinNrPSMsFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.psm.
PSMAccessionsFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.psm.
PSMDecoyFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.psm.
PSMQValueFilter
uk.ac.ebi.pride.utilities.pia.modeller.filter.psm.
PSMScoreFilter
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference.
AbstractProteinInference
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference.
OccamsRazorInference
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference.
ReportAllInference
uk.ac.ebi.pride.utilities.pia.psisupport.
CVUtilities
uk.ac.ebi.pride.utilities.pia.modeller.fdr.
FDRUtilities
uk.ac.ebi.pride.utilities.pia.modeller.filter.
FilterUtilities
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference.
InferenceProteinGroup
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediateGroup
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediatePeptide
uk.ac.ebi.pride.utilities.pia.modeller.scores.peptide.
IntermediatePeptideComparator
(implements java.util.
Comparator
<T>)
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediatePeptideSpectrumMatch
(implements uk.ac.ebi.pride.utilities.pia.modeller.fdr.
FDRComputableByDecoys
)
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl.
PrideIntermediatePeptideSpectrumMatch
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediateProtein
(implements uk.ac.ebi.pride.utilities.pia.modeller.fdr.
FDRComputableByDecoys
)
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl.
PrideIntermediateProtein
uk.ac.ebi.pride.utilities.pia.modeller.scores.psm.
IntermediatePSMComparator
(implements java.util.
Comparator
<T>)
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediateStructure
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediateStructureCreator
uk.ac.ebi.pride.utilities.pia.modeller.peptide.
PeptideModeller
uk.ac.ebi.pride.utilities.pia.modeller.scores.peptide.
PeptideScoring
uk.ac.ebi.pride.utilities.pia.modeller.scores.peptide.
PeptideScoringUseBestPSM
uk.ac.ebi.pride.utilities.pia.modeller.
PIAModeller
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl.
PrideImportController
(implements uk.ac.ebi.pride.utilities.pia.intermediate.
DataImportController
)
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl.
PrideUtilities
uk.ac.ebi.pride.utilities.pia.modeller.protein.
ProteinModeller
uk.ac.ebi.pride.utilities.pia.modeller.scores.protein.
ProteinScoring
uk.ac.ebi.pride.utilities.pia.modeller.scores.protein.
ProteinScoringAdditive
uk.ac.ebi.pride.utilities.pia.modeller.scores.protein.
ProteinScoringMultiplicative
uk.ac.ebi.pride.utilities.pia.modeller.psm.
PSMModeller
uk.ac.ebi.pride.utilities.pia.modeller.scores.
ScoreUtilities
java.lang.
Thread
(implements java.lang.
Runnable
)
uk.ac.ebi.pride.utilities.pia.intermediate.
IntermediateStructureCreatorWorkerThread
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference.
OccamsRazorWorkerThread
Interface Hierarchy
uk.ac.ebi.pride.utilities.pia.intermediate.
DataImportController
uk.ac.ebi.pride.utilities.pia.modeller.fdr.
FDRComputableByDecoys
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl.
PrideImportController.InputFileType
uk.ac.ebi.pride.utilities.pia.modeller.filter.
FilterType
uk.ac.ebi.pride.utilities.pia.modeller.filter.
FilterComparator
uk.ac.ebi.pride.utilities.pia.modeller.scores.
ScoringItemType
uk.ac.ebi.pride.utilities.pia.modeller.scores.
CvScore
uk.ac.ebi.pride.utilities.pia.psisupport.
CVUtilities.CVs
Overview
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