public class IntermediateStructure extends Object
Constructor and Description |
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IntermediateStructure() |
Modifier and Type | Method and Description |
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void |
addCluster(Collection<IntermediateGroup> cluster)
Adds the given cluster to the clusters in the structure.
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List<IntermediatePeptideSpectrumMatch> |
getAllIntermediatePSMs()
Returns all intermediate PSMs of the structure
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Set<IntermediateGroup> |
getCluster(Integer clusterNr)
Returns the cluster given by the clusterNr
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Map<Integer,Set<IntermediateGroup>> |
getClusters()
Returns the clusters
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int |
getNrClusters()
Returns the number of trees
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int |
getNrGroups()
Returns the number of total groups
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int |
getNrPeptides()
Returns the total number of peptides
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int |
getNrProteins()
Returns the total number of proteins
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public void addCluster(Collection<IntermediateGroup> cluster)
cluster
- public int getNrClusters()
public Set<IntermediateGroup> getCluster(Integer clusterNr)
clusterNr
- public Map<Integer,Set<IntermediateGroup>> getClusters()
clusterNr
- public int getNrGroups()
public int getNrPeptides()
public int getNrProteins()
public List<IntermediatePeptideSpectrumMatch> getAllIntermediatePSMs()
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