uk.ac.ebi.pride.utilities.pia.intermediate

Class IntermediateStructureCreatorWorkerThread

java.lang.Object

java.lang.Thread

uk.ac.ebi.pride.utilities.pia.intermediate.IntermediateStructureCreatorWorkerThread

All Implemented Interfaces:

Runnable

public class IntermediateStructureCreatorWorkerThread
extends Thread

This thread builds up the intermediate structure given the peptide to dbSequence mapping.

Author:

julian

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
IntermediateStructureCreatorWorkerThread(int ID, IntermediateStructureCreator parent)

Method Summary

Methods

Modifier and Type	Method and Description
void	insertIntoMap(IntermediatePeptide peptide, Set<IntermediateProtein> proteins, Map<Integer,IntermediateGroup> subGroups) Inserts the given peptide with its accessions into the intermediate format, which is then build up by the groups in subGroups.
void	run()

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

IntermediateStructureCreatorWorkerThread

public IntermediateStructureCreatorWorkerThread(int ID,
                                        IntermediateStructureCreator parent)

Method Detail

run

public void run()

Specified by:

run in interface Runnable

Overrides:

run in class Thread

insertIntoMap

public void insertIntoMap(IntermediatePeptide peptide,
                 Set<IntermediateProtein> proteins,
                 Map<Integer,IntermediateGroup> subGroups)

Inserts the given peptide with its accessions into the intermediate format, which is then build up by the groups in subGroups.

Parameters:

peptide -

dbSequences -

subGroups -