Uses of Interface
uk.ac.ebi.pride.utilities.pia.modeller.fdr.FDRComputableByDecoys

Packages that use FDRComputableByDecoys

Package	Description
uk.ac.ebi.pride.utilities.pia.intermediate
uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl
uk.ac.ebi.pride.utilities.pia.modeller.fdr

Uses of FDRComputableByDecoys in uk.ac.ebi.pride.utilities.pia.intermediate

Classes in uk.ac.ebi.pride.utilities.pia.intermediate that implement FDRComputableByDecoys

Modifier and Type	Class and Description
class	IntermediatePeptideSpectrumMatch Representation of a peptide spectrum match in the intermediate structure.
class	IntermediateProtein An intermediate class, which represents a protein in the intermediate structure.

Uses of FDRComputableByDecoys in uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl

Classes in uk.ac.ebi.pride.utilities.pia.intermediate.prideimpl that implement FDRComputableByDecoys

Modifier and Type	Class and Description
class	PrideIntermediatePeptideSpectrumMatch Representation of a peptide spectrum match in the intermediate structure.
class	PrideIntermediateProtein An intermediate class, which represents a protein

Uses of FDRComputableByDecoys in uk.ac.ebi.pride.utilities.pia.modeller.fdr

Methods in uk.ac.ebi.pride.utilities.pia.modeller.fdr with type parameters of type FDRComputableByDecoys

Modifier and Type	Method and Description
static <T extends FDRComputableByDecoys> void	FDRUtilities.calculateFDR(List<T> items, String scoreAccession) Calculate the FDR on the given score sorted List of FDRComputableByDecoys objects.
static <T extends FDRComputableByDecoys> void	FDRUtilities.calculateFDRScore(List<T> items, String scoreAccession, boolean oboLookup) Calculates the FDR score of the report.