uk.ac.ebi.pride.utilities.pia.modeller.filter.protein

Class ProteinNrPSMsFilter

java.lang.Object

uk.ac.ebi.pride.utilities.pia.modeller.filter.AbstractFilter

uk.ac.ebi.pride.utilities.pia.modeller.filter.protein.ProteinNrPSMsFilter

public class ProteinNrPSMsFilter
extends AbstractFilter

Filters for the number of PSMs on protein level.

If filters are set on the peptides, only the passing PSMs are counted.

Author:

julian

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	shortName

Fields inherited from class uk.ac.ebi.pride.utilities.pia.modeller.filter.AbstractFilter

comparator, negate

Constructor Summary

Constructors

Constructor and Description
ProteinNrPSMsFilter(FilterComparator arg, Integer value, boolean negate)

Method Summary

Methods

Modifier and Type	Method and Description
String	getFilteringName() returns the human readable name, which can be used in a drop-down menu (shorter than getName)
FilterType	getFilterType() returns the type of the filter, i.e.
Object	getFilterValue() returns the value, against which is filtered
String	getName() returns the human readable long name of the filter
Object	getObjectsValue(Object o) returns the value of the Object o, which will be used for filtering.
String	getShortName() returns the machine readable name of the filter
boolean	supportsClass(Object c) Returns, whether the class of the given object is valid for an instance of this filter.

Methods inherited from class uk.ac.ebi.pride.utilities.pia.modeller.filter.AbstractFilter

doFileRefinement, getFilterComparator, getFilterNegate, newInferenceFor, satisfiesFilter, toString, valueNeedsFileRefinement

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

shortName

protected static final String shortName

See Also:

Constant Field Values

Constructor Detail

ProteinNrPSMsFilter

public ProteinNrPSMsFilter(FilterComparator arg,
                   Integer value,
                   boolean negate)

Method Detail

getShortName

public String getShortName()

Description copied from class: AbstractFilter

returns the machine readable name of the filter

Specified by:

getShortName in class AbstractFilter

Returns:

getName

public String getName()

Description copied from class: AbstractFilter

returns the human readable long name of the filter

Specified by:

getName in class AbstractFilter

Returns:

getFilteringName

public String getFilteringName()

Description copied from class: AbstractFilter

returns the human readable name, which can be used in a drop-down menu (shorter than getName)

Specified by:

getFilteringName in class AbstractFilter

Returns:

getFilterValue

public Object getFilterValue()

Description copied from class: AbstractFilter

returns the value, against which is filtered

Specified by:

getFilterValue in class AbstractFilter

Returns:

getFilterType

public FilterType getFilterType()

Description copied from class: AbstractFilter

returns the type of the filter, i.e. the kind of comparison

Specified by:

getFilterType in class AbstractFilter

Returns:

getObjectsValue

public Object getObjectsValue(Object o)

Description copied from class: AbstractFilter

returns the value of the Object o, which will be used for filtering.

Specified by:

getObjectsValue in class AbstractFilter

Returns:

supportsClass

public boolean supportsClass(Object c)

Description copied from class: AbstractFilter

Returns, whether the class of the given object is valid for an instance of this filter.

Specified by:

supportsClass in class AbstractFilter

Returns: