public class ProteinModeller extends Object
IntermediateStructure
.Constructor and Description |
---|
ProteinModeller(IntermediateStructure intermediateStructure,
int allowedThreads) |
Modifier and Type | Method and Description |
---|---|
List<InferenceProteinGroup> |
getInferredProteins()
Returns a list of the inferred protein groups.
|
void |
infereProteins(PeptideScoring peptideScoring,
ProteinScoring proteinScoring,
Class<? extends AbstractProteinInference> proteinInferenceClass,
List<AbstractFilter> filters,
boolean considerModifications)
Runs the protein inference with the given settings and stores the protein
groups in a list, which can be returned by
getInferredProteins() |
public ProteinModeller(IntermediateStructure intermediateStructure, int allowedThreads)
public void infereProteins(PeptideScoring peptideScoring, ProteinScoring proteinScoring, Class<? extends AbstractProteinInference> proteinInferenceClass, List<AbstractFilter> filters, boolean considerModifications)
getInferredProteins()
peptideScoring
- proteinScoring
- proteinInferenceClass
- filters
- considerModifications
- public List<InferenceProteinGroup> getInferredProteins()
infereProteins(PeptideScoring, ProteinScoring, Class, List, boolean)
beforehand.Copyright © 2015. All Rights Reserved.