Package | Description |
---|---|
uk.ac.ebi.pride.utilities.pia.intermediate | |
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference | |
uk.ac.ebi.pride.utilities.pia.modeller.scores |
Modifier and Type | Method and Description |
---|---|
ScoringItemType |
IntermediatePeptide.getPSMsScoringType(IntermediatePeptideSpectrumMatch psm)
Returns the
ScoringItemType of the PSM |
Modifier and Type | Method and Description |
---|---|
Set<IntermediatePeptideSpectrumMatch> |
IntermediatePeptide.getPSMsWithScoringType(ScoringItemType type)
Returns the PSMs with the given
ScoringItemType , which also pass
any filterings. |
void |
IntermediatePeptide.setPSMsScoringType(IntermediatePeptideSpectrumMatch psm,
ScoringItemType type)
Sets the scoring type of the stated PSM to the given
ScoringItemType . |
Modifier and Type | Method and Description |
---|---|
ScoringItemType |
InferenceProteinGroup.getPeptidesScoringType(IntermediatePeptide peptide)
Returns the
ScoringItemType of the peptide |
Modifier and Type | Method and Description |
---|---|
Set<IntermediatePeptide> |
InferenceProteinGroup.getPeptidesWithScoringType(ScoringItemType type)
Returns the peptides with the given
ScoringItemType |
void |
InferenceProteinGroup.setPeptidesScoringType(IntermediatePeptide peptide,
ScoringItemType type)
Sets the scoring type of the stated peptide to the given
ScoringItemType . |
Modifier and Type | Method and Description |
---|---|
static ScoringItemType |
ScoringItemType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static ScoringItemType[] |
ScoringItemType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
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