public abstract class ProteinScoring extends Object
Modifier and Type | Field and Description |
---|---|
protected boolean |
countSpectrumOnce
use a spectrum only once for protein scoring
|
protected PeptideScoring |
peptideScoring
the peptide scoring used
|
Constructor and Description |
---|
ProteinScoring(boolean countSpectrumOnce,
PeptideScoring peptideScoring) |
Modifier and Type | Method and Description |
---|---|
abstract Double |
calculateProteinScore(InferenceProteinGroup proteinGroup)
Calculates the protein score for the inference group.
|
protected boolean countSpectrumOnce
protected PeptideScoring peptideScoring
public ProteinScoring(boolean countSpectrumOnce, PeptideScoring peptideScoring)
countSpectrumOnce
- if set to true and a spectrum is in the scoring
set of more than one peptide, only the peptide with the highest score is
used for full scoring. This resolves some conflicts with PSMs for
different modifications from the same spectrapublic abstract Double calculateProteinScore(InferenceProteinGroup proteinGroup)
intermediatePeptide
- Copyright © 2015. All Rights Reserved.