uk.ac.ebi.pride.utilities.pia.modeller.scores.protein

Class ProteinScoringMultiplicative

java.lang.Object

uk.ac.ebi.pride.utilities.pia.modeller.scores.protein.ProteinScoring

uk.ac.ebi.pride.utilities.pia.modeller.scores.protein.ProteinScoringMultiplicative

public class ProteinScoringMultiplicative
extends ProteinScoring

Calculates the score of the protein by multiplying up the scores of peptides and returning the -log10 of the score (log for numeric reasons, minus to get higherScoreBetter)

Author:

julian

Field Summary

Fields inherited from class uk.ac.ebi.pride.utilities.pia.modeller.scores.protein.ProteinScoring

countSpectrumOnce, peptideScoring

Constructor Summary

Constructors

Constructor and Description
ProteinScoringMultiplicative(boolean countSpectrumOnce, PeptideScoring peptideScoring)

Method Summary

Methods

Modifier and Type	Method and Description
Double	calculateProteinScore(InferenceProteinGroup proteinGroup) Calculates the protein score for the inference group.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinScoringMultiplicative

public ProteinScoringMultiplicative(boolean countSpectrumOnce,
                            PeptideScoring peptideScoring)

Method Detail

calculateProteinScore

public Double calculateProteinScore(InferenceProteinGroup proteinGroup)

Description copied from class: ProteinScoring

Calculates the protein score for the inference group.

Specified by:

calculateProteinScore in class ProteinScoring