All Classes
AbstractPrecursorIon
AbstractProductIon
AminoAcid
AminoAcidSequence
ApproximateComparator
Atom
CvTermReference
DefaultPeptideIon
DefaultPrecursorIon
DefaultProductIon
Element
FileUtil
FragmentIonType
FragmentIonTypeColor
FragmentIonUtilities
GraviUtilities
Group
IllegalAminoAcidSequenceException
ImmoniumIon
InternetChecker
IonCleavageException
IOUtilities
IsoelectricPointUtils
IsoelectricPointUtils.BjellpI
Mass
MassSpecFileFormat
MassSpecFileRegx
MathUtils
MoleculeUtilities
NeutralLoss
NuclearParticle
NumberUtilities
Peak
PeakSet
Peptide
PeptideIon
PeptideScore
PrecursorIon
ProductIon
ProductIonFactory
ProductIonPair
ProductIonSet
ProductIonType
PTModification
QuantCvTermReference
RegExUtilities
SearchEngineCvTermReference
SearchEngineScoreCvTermReference
SearchEngineType
StringUtils
Triple
Tuple