uk.ac.ebi.pride.utilities.iongen.impl

Class AbstractPrecursorIon

java.lang.Object

uk.ac.ebi.pride.utilities.iongen.impl.DefaultPeptideIon

uk.ac.ebi.pride.utilities.iongen.impl.AbstractPrecursorIon

All Implemented Interfaces:

PeptideIon, PrecursorIon

Direct Known Subclasses:

DefaultPrecursorIon

public abstract class AbstractPrecursorIon
extends DefaultPeptideIon
implements PrecursorIon

Implement most of methods of PrecursorIon. Extends DefaultPeptideIon which inherit peptide ion methods: such as DefaultPeptideIon.getMass(), DefaultPeptideIon.getMassOverCharge(), and so on.

Version:

0.1-SNAPSHOT

Author:

Qingwei XU

Constructor Summary

Constructors

Constructor and Description
AbstractPrecursorIon(Peptide peptide, int charge)

Method Summary

Methods

Modifier and Type	Method and Description
ProductIon	getProductIon(ProductIonType type, int position, int charge) A precursor ion can cleavage different type of product ions.

Methods inherited from class uk.ac.ebi.pride.utilities.iongen.impl.DefaultPeptideIon

equals, getCharge, getMass, getMassOverCharge, getPeptide, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.pride.utilities.iongen.model.PeptideIon

getCharge, getMass, getMassOverCharge, getPeptide

Constructor Detail

AbstractPrecursorIon

public AbstractPrecursorIon(Peptide peptide,
                    int charge)

Method Detail

getProductIon

public ProductIon getProductIon(ProductIonType type,
                       int position,
                       int charge)
                         throws IonCleavageException

A precursor ion can cleavage different type of product ions.

Specified by:

getProductIon in interface PrecursorIon

Parameters:

type - can not set null.

position - from [1..peptide.length-1]

charge - from [1..3], based on the precursor charge.

Returns:

ProductIon, can not return a null.

Throws:

IonCleavageException, - when user set position and charge overflow the range of setting.

NullPointerException, - when type is null.

IonCleavageException