uk.ac.ebi.pride.utilities.iongen.impl

Class DefaultPrecursorIon

java.lang.Object

uk.ac.ebi.pride.utilities.iongen.impl.DefaultPeptideIon

uk.ac.ebi.pride.utilities.iongen.impl.AbstractPrecursorIon

uk.ac.ebi.pride.utilities.iongen.impl.DefaultPrecursorIon

All Implemented Interfaces:

PeptideIon, PrecursorIon

public class DefaultPrecursorIon
extends AbstractPrecursorIon

Provide different construct methods to create precursor ion.

Version:

0.1-SNAPSHOT

Author:

Qingwei XU

Constructor Summary

Constructors

Constructor and Description
DefaultPrecursorIon(Peptide peptide) Default charge is 2, that means this type of precursor ion can generate product ions which charges up to +2.
DefaultPrecursorIon(Peptide peptide, int charge)
DefaultPrecursorIon(String sequence) Default charge is 2, that means this type of precursor ion can generate product ions which charges up to +2.
DefaultPrecursorIon(String sequence, int charge)

Method Summary

Methods inherited from class uk.ac.ebi.pride.utilities.iongen.impl.AbstractPrecursorIon

getProductIon

Methods inherited from class uk.ac.ebi.pride.utilities.iongen.impl.DefaultPeptideIon

equals, getCharge, getMass, getMassOverCharge, getPeptide, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.pride.utilities.iongen.model.PeptideIon

getCharge, getMass, getMassOverCharge, getPeptide

Constructor Detail

DefaultPrecursorIon

public DefaultPrecursorIon(Peptide peptide,
                   int charge)

DefaultPrecursorIon

public DefaultPrecursorIon(Peptide peptide)

Default charge is 2, that means this type of precursor ion can generate product ions which charges up to +2.

Parameters:

peptide - Peptide

DefaultPrecursorIon

public DefaultPrecursorIon(String sequence,
                   int charge)

See Also:

Peptide.Peptide(String)

DefaultPrecursorIon

public DefaultPrecursorIon(String sequence)

Default charge is 2, that means this type of precursor ion can generate product ions which charges up to +2.

Parameters:

sequence - Peptide.Peptide(String)