Uses of Class
uk.ac.ebi.pride.utilities.iongen.model.PeakSet

Packages that use PeakSet

Package	Description
uk.ac.ebi.pride.utilities.iongen.model

Uses of PeakSet in uk.ac.ebi.pride.utilities.iongen.model

Methods in uk.ac.ebi.pride.utilities.iongen.model that return PeakSet

Modifier and Type	Method and Description
static PeakSet	PeakSet.getInstance(double[] mzArray, double[] intensityArray) Translate the m/z Array and intensity Array into a set of peaks.
PeakSet	PeakSet.getTopIntensityPeak(int top)
PeakSet	PeakSet.subSet(double mz, double interval) Create a subset of peak set.

Methods in uk.ac.ebi.pride.utilities.iongen.model that return types with arguments of type PeakSet

Modifier and Type	Method and Description
List<PeakSet>	PeptideScore.getDepthPeakSetList(int peakDepth, int splitSize) Peak set was first separated into windows of splitSize m/z units.
List<PeakSet>	PeakSet.splitWindow(int splitSize) split the whole peaks into list of subsets.

Methods in uk.ac.ebi.pride.utilities.iongen.model with parameters of type PeakSet

Modifier and Type	Method and Description
ProductIonSet	PeptideScore.getMatchedSet(ProductIonSet productIonSet, PeakSet peakSet) match the peak set to fragment ion list with an ion tolerance of [-tolerance, +tolerance]

Constructors in uk.ac.ebi.pride.utilities.iongen.model with parameters of type PeakSet

Constructor and Description
PeptideScore(PrecursorIon precursorIon, PeakSet peakSet)
PeptideScore(PrecursorIon precursorIon, PeakSet peakSet, ProductIonPair ionPair, double tolerance, boolean showWaterLoss, boolean showAmmoniaLoss)