Uses of Interface
uk.ac.ebi.pride.utilities.iongen.model.PrecursorIon

Packages that use PrecursorIon

Package	Description
uk.ac.ebi.pride.utilities.iongen.impl
uk.ac.ebi.pride.utilities.iongen.model
uk.ac.ebi.pride.utilities.util

Uses of PrecursorIon in uk.ac.ebi.pride.utilities.iongen.impl

Classes in uk.ac.ebi.pride.utilities.iongen.impl that implement PrecursorIon

Modifier and Type	Class and Description
class	AbstractPrecursorIon Implement most of methods of PrecursorIon.
class	DefaultPrecursorIon Provide different construct methods to create precursor ion.

Methods in uk.ac.ebi.pride.utilities.iongen.impl that return PrecursorIon

Modifier and Type	Method and Description
PrecursorIon	AbstractProductIon.getPrecursorIon()

Constructors in uk.ac.ebi.pride.utilities.iongen.impl with parameters of type PrecursorIon

Constructor and Description
AbstractProductIon(PrecursorIon precursorIon, ProductIonType type, int position, Peptide peptide, int charge) Create product ion instance.
DefaultProductIon(PrecursorIon precursorIon, ProductIonType type, int position, Peptide peptide, int charge) Create product ion instance.
ImmoniumIon(PrecursorIon precursorIon, int position) the position from [0..length-1]
ImmoniumIon(PrecursorIon precursorIon, int position, int charge)

Uses of PrecursorIon in uk.ac.ebi.pride.utilities.iongen.model

Methods in uk.ac.ebi.pride.utilities.iongen.model that return PrecursorIon

Modifier and Type	Method and Description
PrecursorIon	ProductIon.getPrecursorIon()

Constructors in uk.ac.ebi.pride.utilities.iongen.model with parameters of type PrecursorIon

Constructor and Description
PeptideScore(PrecursorIon precursorIon, PeakSet peakSet)
PeptideScore(PrecursorIon precursorIon, PeakSet peakSet, ProductIonPair ionPair, double tolerance, boolean showWaterLoss, boolean showAmmoniaLoss)

Uses of PrecursorIon in uk.ac.ebi.pride.utilities.util

Methods in uk.ac.ebi.pride.utilities.util with parameters of type PrecursorIon

Modifier and Type	Method and Description
static List<ProductIon>	ProductIonFactory.createDefaultProductIons(PrecursorIon precursorIon, ProductIonType type, int charge)
static List<ImmoniumIon>	ProductIonFactory.createImmoniumProductIons(PrecursorIon precursorIon, int charge)