public enum CvTermReference extends Enum<CvTermReference>
Modifier and Type | Method and Description |
---|---|
String |
getAccession() |
Collection<String> |
getChildAccessions() |
String |
getCvLabel() |
static CvTermReference |
getCvRefByAccession(String accession)
Get Cv term by accession.
|
String |
getName() |
Collection<String> |
getParentAccessions() |
static boolean |
hasAccession(String accession)
Check whether the accession exists in the enum.
|
static boolean |
isChild(String parentAcc,
String childAcc)
Check whether two accessions are parent-child relationship.
|
static CvTermReference |
valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static CvTermReference[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final CvTermReference MS_ANALYSIS_SOFTWARE
public static final CvTermReference MS_SOFTWARE
public static final CvTermReference MS_DATABASE
public static final CvTermReference MS_PUBLICATION_DOI
public static final CvTermReference MS_SEARCH_PARAM_FIXED_MOD
public static final CvTermReference MS_SEARCH_PARAM_VAR_MOD
public static final CvTermReference MS_FDR_PROTEIN
public static final CvTermReference MS_LOCAL_FDR_PROTEIN
public static final CvTermReference MS_GLOBAL_FDR_PROTEIN
public static final CvTermReference MS_FDR_PSM
public static final CvTermReference MS_LOCAL_FDR_PSM
public static final CvTermReference MS_GLOBAL_FDR_PSM
public static final CvTermReference PRIDE_DECOY_HIT
public static final CvTermReference PRIDE_GEL_BASED_EXPERIMENT
public static final CvTermReference PRIDE_GEL_IDENTIFIER
public static final CvTermReference PRIDE_GEL_SPOT_IDENTIFIER
public static final CvTermReference PRIDE_INDISTINGUISHABLE_ACCESSION
public static final CvTermReference PRIDE_PROTEIN_NAME
public static final CvTermReference PRIDE_REFERENCE_DOI
public static final CvTermReference PRIDE_REFERENCE_PUBMED
public static final CvTermReference PRIDE_DOWNSTREAM_FLANKING_SEQUENCE
public static final CvTermReference PRIDE_UPSTREAM_FLANKING_SEQUENCE
public static final CvTermReference MS_CHARGE_STATE
public static final CvTermReference MS_PRECURSOR_MZ
public static final CvTermReference MS_DECOY_PEPTIDE
public static final CvTermReference MS_MULTIPLE_SAMPLE
public static final CvTermReference PRIDE_SAMPLE_DESCRIPTION
public static final CvTermReference MS_PSI_MZDATA_FILE
public static final CvTermReference MS_SPEC_NATIVE_ID_FORMAT
public static final CvTermReference MS_FIXED_MOD
public static final CvTermReference MS_VAR_MOD
public static final CvTermReference SCAN_POLARITY
public static final CvTermReference NEGATIVE_SCAN
public static final CvTermReference POSITIVE_SCAN
public static final CvTermReference SPECTRUM_TYPE
public static final CvTermReference CHARGE_INVERSION_MASS_SPECTRUM
public static final CvTermReference CONSTANT_NEUTRAL_GAIN_SPECTRUM
public static final CvTermReference SPECTRUM_REPRESENTATION
public static final CvTermReference CENTROID_SPECTRUM
public static final CvTermReference PROFILE_SPECTRUM
public static final CvTermReference SPECTRUM_ATTRIBUTE
public static final CvTermReference TOTAl_ION_CURRENT
public static final CvTermReference MS_LEVEL
public static final CvTermReference SPECTRUM_TITLE
public static final CvTermReference BINARY_DATA_COMPRESSION_TYPE
public static final CvTermReference ZLIB_COMPRESSION
public static final CvTermReference NO_COMPRESSION
public static final CvTermReference BINARY_DATA_ARRAY
public static final CvTermReference MZ_ARRAY
public static final CvTermReference INTENSITY_ARRAY
public static final CvTermReference TIME_ARRAY
public static final CvTermReference BINARY_DATA_TYPE
public static final CvTermReference FLOAT_16_BIT
public static final CvTermReference FLOAT_32_BIT
public static final CvTermReference FLOAT_64_BIT
public static final CvTermReference INT_32_BIT
public static final CvTermReference INT_64_BIT
public static final CvTermReference DATA_FILE_CONTENT
public static final CvTermReference MASS_SPECTRUM
public static final CvTermReference CONTACT_NAME
public static final CvTermReference CONTACT_ORG
public static final CvTermReference CONTACT_EMAIL
public static final CvTermReference MS_PROTEIN_DESCRIPTION
public static final CvTermReference CONVERSION_TO_MZML
public static final CvTermReference INSTRUMENT_MODEL
public static final CvTermReference SCAN_WINDOW_LOWER_LIMIT
public static final CvTermReference SCAN_WINDOW_UPPER_LIMIT
public static final CvTermReference SUM_OF_SPECTRA
public static final CvTermReference NO_COMBINATION
public static final CvTermReference PRODUCT_ION_MZ
public static final CvTermReference PRODUCT_ION_MZ_PLGS
public static final CvTermReference MS_PRODUCT_ION_MZ
public static final CvTermReference MS_NEUTRAL_LOSS
public static final CvTermReference PRODUCT_ION_INTENSITY
public static final CvTermReference PRODUCT_ION_INTENSITY_PLGS
public static final CvTermReference MS_PRODUCT_ION_INTENSITY
public static final CvTermReference PRODUCT_ION_MASS_ERROR
public static final CvTermReference PRODUCT_ION_MASS_ERROR_PLGS
public static final CvTermReference MS_PRODUCT_ION_MASS_ERROR
public static final CvTermReference PRODUCT_ION_RETENTION_TIME_ERROR
public static final CvTermReference PRODUCT_ION_RETENTION_TIME_ERROR_PLGS
public static final CvTermReference PRODUCT_ION_CHARGE
public static final CvTermReference PRODUCT_ION_TYPE
public static final CvTermReference Y_ION
public static final CvTermReference Y_ION_H2O
public static final CvTermReference Y_ION_NH3
public static final CvTermReference B_ION
public static final CvTermReference B_ION_H2O
public static final CvTermReference B_ION_NH3
public static final CvTermReference IN_SOURCE_ION
public static final CvTermReference NON_IDENTIFIED_ION
public static final CvTermReference CO_ELUTING_ION
public static final CvTermReference X_ION
public static final CvTermReference X_ION_H2O
public static final CvTermReference X_ION_NH3
public static final CvTermReference Z_ION
public static final CvTermReference Z_ION_H2O
public static final CvTermReference Z_ION_NH3
public static final CvTermReference Z_H_ION
public static final CvTermReference Z_HH_ION
public static final CvTermReference A_ION
public static final CvTermReference A_ION_H2O
public static final CvTermReference A_ION_NH3
public static final CvTermReference C_ION
public static final CvTermReference C_ION_H2O
public static final CvTermReference C_ION_NH3
public static final CvTermReference IMMONIUM_ION
public static final CvTermReference IMMONIUM_ION_A
public static final CvTermReference IMMONIUM_ION_C
public static final CvTermReference IMMONIUM_ION_D
public static final CvTermReference IMMONIUM_ION_E
public static final CvTermReference IMMONIUM_ION_F
public static final CvTermReference IMMONIUM_ION_G
public static final CvTermReference IMMONIUM_ION_H
public static final CvTermReference IMMONIUM_ION_I
public static final CvTermReference IMMONIUM_ION_K
public static final CvTermReference IMMONIUM_ION_L
public static final CvTermReference IMMONIUM_ION_M
public static final CvTermReference IMMONIUM_ION_N
public static final CvTermReference IMMONIUM_ION_P
public static final CvTermReference IMMONIUM_ION_Q
public static final CvTermReference IMMONIUM_ION_R
public static final CvTermReference IMMONIUM_ION_S
public static final CvTermReference IMMONIUM_ION_T
public static final CvTermReference IMMONIUM_ION_V
public static final CvTermReference IMMONIUM_ION_W
public static final CvTermReference IMMONIUM_ION_Y
public static final CvTermReference ION_SELECTION_CHARGE_STATE
public static final CvTermReference ION_SELECTION_MZ
public static final CvTermReference ION_SELECTION_INTENSITY
public static final CvTermReference PSI_ION_SELECTION_CHARGE_STATE
public static final CvTermReference PSI_ION_SELECTION_MZ
public static final CvTermReference PSI_ION_SELECTION_INTENSITY
public static final CvTermReference X_CORRELATION
public static final CvTermReference MS_SEARCH_ENGINE_SPECIFIC_SCORE
public static final CvTermReference OMSSA_E_VALUE
public static final CvTermReference OMSSA_P_VALUE
public static final CvTermReference MS_OMSSA_E
public static final CvTermReference MS_OMSSA_P
public static final CvTermReference MASCOT_SCORE
public static final CvTermReference MASCOT_EXPECT_VALUE
public static final CvTermReference MS_MASCOT_SCORE
public static final CvTermReference MS_MASCOT_EXPECT_VALUE
public static final CvTermReference XTANDEM_HYPER_SCORE
public static final CvTermReference XTANDEM_EXPECTANCY_SCORE
public static final CvTermReference XTANDEM_ZSCORE
public static final CvTermReference MS_XTANDEM_HYPERSCORE
public static final CvTermReference MS_XTANDEM_EXPECTANCY_SCORE
public static final CvTermReference SEQUEST_CN
public static final CvTermReference SEQUEST_SCORE
public static final CvTermReference SEQUEST_DELTA_CN
public static final CvTermReference MS_SEQUEST_CONSENSUS_SCORE
public static final CvTermReference MS_SEQUEST_DELTA_CN
public static final CvTermReference MS_SEQUEST_XCORR
public static final CvTermReference MS_SEQUEST_PROBABILITY
public static final CvTermReference SPECTRUM_MILL_PEPTIDE_SCORE
public static final CvTermReference MS_SPECTRUMMILL_SCORE
public static final CvTermReference PEPTIDE_PROPHET_DISCRIMINANT_SCORE
public static final CvTermReference PEPTIDE_PROPHET_PROBABILITY
public static final CvTermReference MS_MYRIMATCH_MVH
public static final CvTermReference MS_MYRIMATCH_NMATCHS
public static final CvTermReference MS_MYRIMATCH_NOMATCHS
public static final CvTermReference MS_MYRIMATCH_MZFIDELITY
public static final CvTermReference MS_MSGF_RAWSCORE
public static final CvTermReference MS_MSGF_DENOVOSCORE
public static final CvTermReference MS_MSGF_SPECEVALUE
public static final CvTermReference MS_MSGF_EVALUE
public static final CvTermReference MS_MSGF_QVALUE
public static final CvTermReference MS_MSGF_PEPQVALUE
public static final CvTermReference MS_PEPTIDESHAKER_PSM_SCORE
public static final CvTermReference MS_PEPTIDESHAKER_PSM_CONFIDENCE
public static final CvTermReference MS_PEPTIDESHAKER_PROTEIN_SCORE
public static final CvTermReference MS_PEPTIDESHAKER_PROTEIN_CONFIDENCE
public static final CvTermReference MS_PARAGON_SCORE
public static final CvTermReference MS_PHENYX_SCORE
public static final CvTermReference MS_PROTEIN_EXTRACTOR_SCORE
public static final CvTermReference MS_PROTEIN_LYNC_SCORE
public static final CvTermReference MS_PROTEINSCAPE_SEQUEST_METASCORE
public static final CvTermReference MS_SONAR_SCORE
public static final CvTermReference MS_PERCULATOR_SCORE
public static final CvTermReference PROJECT_NAME
public static final CvTermReference EXPERIMENT_DESCRIPTION
public static final CvTermReference PEPTIDE_GLOBAL_FDR
public static final CvTermReference PROTEIN_GLOBAL_FDR
public static final CvTermReference EXPERIMENT_GLOBAL_CREATIONDATE
public static final CvTermReference MS_SCAN_DATE
public static final CvTermReference MS_SOFTWARE_PROCESSING
public static final CvTermReference MS_SOFTWARE_ACQUISITION
public static final CvTermReference MS_FILE_SPECTRUM
public static final CvTermReference MS_DATAPROCESSING_DEISOTOPING
public static final CvTermReference MS_DATAPROCESSING_DECONVOLUTION
public static final CvTermReference MS_DATAPROCESSING_INTENSITY_THRESHOLD
public static final CvTermReference MS_DATAPROCESSING_CENTROID
public static final CvTermReference MS_INSTRUMENT_MODEL
public static final CvTermReference MS_INSTRUMENT_DETECTOR
public static final CvTermReference MS_INSTRUMENT_ANALYZER
public static final CvTermReference MS_INSTRUMENT_SOURCE
public static final CvTermReference MS_MGF_TITLE_INDEX
public static final CvTermReference MS_FILE_FORMAT_WIFF
public static final CvTermReference MS_ID_FORMAT_WIFF
public static final CvTermReference MS_MGF_FILE_FORMAT
public static final CvTermReference MS_MGF_IDFORMAT_TITLE
public static CvTermReference[] values()
for (CvTermReference c : CvTermReference.values()) System.out.println(c);
public static CvTermReference valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is nullpublic String getCvLabel()
public String getAccession()
public String getName()
public Collection<String> getChildAccessions()
public Collection<String> getParentAccessions()
public static CvTermReference getCvRefByAccession(String accession)
accession
- controlled vocabulary accession.public static boolean hasAccession(String accession)
accession
- controlled vocabulary accessionCopyright © 2015 European Bioinformatics Institute. All Rights Reserved.