public final class MzXmlTransformer extends Object
Modifier and Type | Method and Description |
---|---|
static DataProcessing |
transformDataProcessing(int order,
uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.DataProcessing oldDataProcessing)
Convert data processing
|
static List<DataProcessing> |
transformDataProcessingList(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.DataProcessing> rawDataProcList)
Convert a list of data prcessings
|
static CvParam |
transformDurationToCvParam(Duration startDate,
uk.ac.ebi.pride.utilities.term.CvTermReference msScanDate) |
static List<SourceFile> |
transformFileSources(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.ParentFile> rawParentFiles) |
static List<InstrumentConfiguration> |
transformMsInstrument(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.MsInstrument> rawInstrumentList) |
static List<Person> |
transformPersonContacts(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.Operator> operators) |
static Software |
transformSoftware(uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.Software rawSoftware) |
static List<Software> |
transformSoftwares(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.Software> rawSoftwares) |
static Spectrum |
transformSpectrum(uk.ac.ebi.pride.tools.jmzreader.model.Spectrum spectrum)
Convert spectrum
|
public static Spectrum transformSpectrum(uk.ac.ebi.pride.tools.jmzreader.model.Spectrum spectrum)
spectrum
- spectrum objectpublic static List<Person> transformPersonContacts(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.Operator> operators)
public static List<SourceFile> transformFileSources(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.ParentFile> rawParentFiles)
public static List<Software> transformSoftwares(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.Software> rawSoftwares)
public static Software transformSoftware(uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.Software rawSoftware)
public static List<InstrumentConfiguration> transformMsInstrument(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.MsInstrument> rawInstrumentList)
public static List<DataProcessing> transformDataProcessingList(List<uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.DataProcessing> rawDataProcList)
rawDataProcList
- mzXML data processing listpublic static DataProcessing transformDataProcessing(int order, uk.ac.ebi.pride.tools.mzxml_parser.mzxml.model.DataProcessing oldDataProcessing)
oldDataProcessing
- jmzml data processingCopyright © 2015 European Bioinformatics Institute. All Rights Reserved.