Package | Description |
---|---|
uk.ac.ebi.pridemod.io.slimmod.model | |
uk.ac.ebi.pridemod.io.slimmod.tab |
Modifier and Type | Method and Description |
---|---|
SlimModification |
SlimModCollection.get(int index)
Get a modification in the list.
|
SlimModification |
SlimModCollection.getbyName(String name)
Get the list of slim modifications compare only with the default specificity of
each modification.
|
SlimModification |
SlimModCollection.remove(int index)
Remove an slim object from the list of slim modification by index.
|
SlimModification |
SlimModCollection.set(int index,
SlimModification element)
Set slim modification with the value passed by parameter element in the position
index of the list.
|
Modifier and Type | Method and Description |
---|---|
Iterator<SlimModification> |
SlimModCollection.iterator()
An iterator through the modification List
|
ListIterator<SlimModification> |
SlimModCollection.listIterator()
Get List of Iterator of the List of modifications
|
ListIterator<SlimModification> |
SlimModCollection.listIterator(int index)
Get List of Iterator of the List of modifications from specific position
|
List<SlimModification> |
SlimModCollection.subList(int fromIndex,
int toIndex)
Get a collection of modification between to indexes.
|
Modifier and Type | Method and Description |
---|---|
void |
SlimModCollection.add(int index,
SlimModification element)
Add an Slim Modification in the list in an specific position (index)
|
boolean |
SlimModCollection.add(SlimModification mod)
Add an slim modification to the list of modifications
|
SlimModification |
SlimModCollection.set(int index,
SlimModification element)
Set slim modification with the value passed by parameter element in the position
index of the list.
|
Modifier and Type | Method and Description |
---|---|
boolean |
SlimModCollection.addAll(Collection<? extends SlimModification> c)
Add a collection of slim modifications to the current list of slim modifications.
|
boolean |
SlimModCollection.addAll(int index,
Collection<? extends SlimModification> c)
Add a collection of slim modifications from the index integer
|
Constructor and Description |
---|
SlimModCollection(List<SlimModification> modCollection)
Constructor that create an instance of the SlimModCollection class
and initializes the collection of slim modification with the parameter.
|
Modifier and Type | Method and Description |
---|---|
protected static SlimModification |
ReadTabSlim.processLine(String aLine) |
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