Constructor and Description |
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AbstractPTM(String accession,
String name,
String description,
Double monoDeltaMass,
Double averageDeltaMass,
List<Specificity> specificityList,
String formula)
Contructor with all the fields for a general modification
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Modifier and Type | Method and Description |
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String |
getAccession()
Return the accession of a PTM.
|
Double |
getAveDeltaMass()
Returns the delta Average mass of the modification.
|
String |
getDescription()
Returns the description of the Modification.
|
String |
getFormula()
Return the Chemical Formula of the modification
|
Double |
getMonoDeltaMass()
Returns the delta MonoIsotopic mass of the modification.
|
String |
getName()
Get the Name of the PTMs
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List<Specificity> |
getSpecificityCollection()
Return the List of AminoAcid Specificity.
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public AbstractPTM(String accession, String name, String description, Double monoDeltaMass, Double averageDeltaMass, List<Specificity> specificityList, String formula)
accession
- PTM accessionname
- Namedescription
- DescriptionmonoDeltaMass
- MonoIsotopic Delta MassaverageDeltaMass
- Average Delta MassspecificityList
- List of Specificityformula
- Chemical Formulapublic String getAccession()
PTM
getAccession
in interface PTM
public Double getMonoDeltaMass()
PTM
getMonoDeltaMass
in interface PTM
public Double getAveDeltaMass()
PTM
getAveDeltaMass
in interface PTM
public String getDescription()
PTM
getDescription
in interface PTM
public List<Specificity> getSpecificityCollection()
PTM
getSpecificityCollection
in interface PTM
public String getFormula()
PTM
getFormula
in interface PTM
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