uk.ac.ebi.pridemod.model

Interface PTM

All Known Implementing Classes:

AbstractPTM, PRIDEModPTM, PSIModPTM, UniModPTM

public interface PTM

Interface for PTMs. The PTMs are described by Accession, Name and Delta Mass. yperez.

Method Summary

Methods

Modifier and Type	Method and Description
String	getAccession() Return the accession of a PTM.
Double	getAveDeltaMass() Returns the delta Average mass of the modification.
String	getDescription() Returns the description of the Modification.
String	getFormula() Return the Chemical Formula of the modification
Double	getMonoDeltaMass() Returns the delta MonoIsotopic mass of the modification.
String	getName() Get the Name of the PTMs
List<Specificity>	getSpecificityCollection() Return the List of AminoAcid Specificity.

Method Detail

getAccession

String getAccession()

Return the accession of a PTM. All the PTMs will be described by one unique accession. In case of unimod for example is 31 or 35.

Returns:

Accession

getName

String getName()

Get the Name of the PTMs

Returns:

Name

getMonoDeltaMass

Double getMonoDeltaMass()

Returns the delta MonoIsotopic mass of the modification.

Returns:

getAveDeltaMass

Double getAveDeltaMass()

Returns the delta Average mass of the modification.

Returns:

getDescription

String getDescription()

Returns the description of the Modification.

Returns:

Description

getSpecificityCollection

List<Specificity> getSpecificityCollection()

Return the List of AminoAcid Specificity.

Returns:

getFormula

String getFormula()

Return the Chemical Formula of the modification

Returns: