Package | Description |
---|---|
uk.ac.ebi.pride.utilities.iongen.model |
Modifier and Type | Method and Description |
---|---|
ProductIonSet |
PeptideScore.getMatchedSet(ProductIonSet productIonSet,
PeakSet peakSet)
match the peak set to fragment ion list with an ion tolerance of [-tolerance, +tolerance]
|
ProductIonSet |
PeptideScore.getProductIonSet() |
Modifier and Type | Method and Description |
---|---|
List<ProductIonSet> |
ProductIonSet.splitWindow(int splitSize)
split the whole fragment ion list into list of subsets.
|
Modifier and Type | Method and Description |
---|---|
ProductIonSet |
PeptideScore.getMatchedSet(ProductIonSet productIonSet,
PeakSet peakSet)
match the peak set to fragment ion list with an ion tolerance of [-tolerance, +tolerance]
|
double |
PeptideScore.getScore(ProductIonSet productIonSet,
int peakDepth,
int splitSize)
get a peptide score based on peakDepth.
|
double |
PeptideScore.getWeightedAvgScore(ProductIonSet productIonSet,
int splitSize,
double[] weightList)
get a weighted average peptide score.
|
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