Package | Description |
---|---|
uk.ac.ebi.pride.utilities.pia.modeller.protein | |
uk.ac.ebi.pride.utilities.pia.modeller.protein.inference |
Modifier and Type | Method and Description |
---|---|
void |
ProteinModeller.infereProteins(PeptideScoring peptideScoring,
ProteinScoring proteinScoring,
Class<? extends AbstractProteinInference> proteinInferenceClass,
List<AbstractFilter> filters,
boolean considerModifications)
Runs the protein inference with the given settings and stores the protein
groups in a list, which can be returned by
ProteinModeller.getInferredProteins() |
Modifier and Type | Class and Description |
---|---|
class |
OccamsRazorInference
This inference filter reports all the PIA
IntermediateGroup s as protein,
which together fulfill the Occam's Razor constraints. |
class |
ReportAllInference
This inference reports all the PIA
IntermediateGroup s as one protein. |
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