Package | Description |
---|---|
uk.ac.ebi.pride.utilities.mol |
Modifier and Type | Method and Description |
---|---|
Map<Integer,PTModification> |
Peptide.getPTM() |
Modifier and Type | Method and Description |
---|---|
boolean |
Peptide.addModification(Integer position,
PTModification modification)
Add a modification into peptide.
|
void |
Peptide.removeModification(PTModification modification) |
Modifier and Type | Method and Description |
---|---|
boolean |
Peptide.addALLModification(Map<Integer,PTModification> modifications)
If patch add modifications, we will rollback to the point of before patch add.
|
static double |
MoleculeUtilities.calculatePeptideAvgMass(AminoAcidSequence aminoAcidSequence,
List<PTModification> modifications,
double... massCorrections)
Calculate peptide's average mass.
|
static double |
MoleculeUtilities.calculatePeptideMonoMass(AminoAcidSequence aminoAcidSequence,
List<PTModification> modifications,
double... massCorrections)
Calculate peptide's monoisotopic mass.
|
Constructor and Description |
---|
Peptide(List<AminoAcid> acidList,
Group n_terminal,
Group c_terminal,
Map<Integer,PTModification> ptm)
Create a peptide with PTM.
|
Peptide(List<AminoAcid> acidList,
Map<Integer,PTModification> ptm)
Create a peptide with PTM.
|
Peptide(String sequence,
Group n_terminal,
Group c_terminal,
Map<Integer,PTModification> ptm)
Create a peptide with PTM.
|
Peptide(String sequence,
Map<Integer,PTModification> ptm)
Create a peptide with PTM.
|
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.