Package | Description |
---|---|
uk.ac.ebi.pride.utilities.iongen.ion | |
uk.ac.ebi.pride.utilities.mol |
Modifier and Type | Field and Description |
---|---|
static FragmentIonType |
FragmentIonType.A_ION |
static FragmentIonType |
FragmentIonType.AMBIGUOUS_ION |
static FragmentIonType |
FragmentIonType.B_ION |
static FragmentIonType |
FragmentIonType.C_ION |
static FragmentIonType |
FragmentIonType.CO_ELUTING_ION |
static FragmentIonType |
FragmentIonType.D_ION
d ions from partial side chain fragmentation of a ions
|
static FragmentIonType |
FragmentIonType.IMMONIUM_ION |
static FragmentIonType |
FragmentIonType.IN_SOURCE_ION |
static FragmentIonType |
FragmentIonType.NON_IDENTIFIED_ION |
static FragmentIonType |
FragmentIonType.PRECURSOR_ION |
static FragmentIonType |
FragmentIonType.V_ION
v ions from complete side chain fragmentation of y ions
|
static FragmentIonType |
FragmentIonType.W_ION
w ions from partial side chain fragmentation of z ions
|
static FragmentIonType |
FragmentIonType.X_ION |
static FragmentIonType |
FragmentIonType.Y_ION |
static FragmentIonType |
FragmentIonType.Z_ION |
Modifier and Type | Method and Description |
---|---|
static FragmentIonType |
FragmentIonUtilities.getFragmentIonType(String ionType)
Use pride ontology to map ion type.
|
Modifier and Type | Method and Description |
---|---|
static Color |
FragmentIonTypeColor.getColor(FragmentIonType ionType)
Get the color according to the input ion type.
|
static boolean |
FragmentIonUtilities.isBackboneFragmentIonType(FragmentIonType ionType)
Retrun true if the ion is a, b, c, x, y, z.
|
static boolean |
FragmentIonUtilities.isCTerminalFragmentation(FragmentIonType ionType)
Check whether the fragment ion type is C-Terminal fragment ions.
|
static boolean |
FragmentIonUtilities.isCTerminalSideChainFragmentation(FragmentIonType ionType)
Check whether the fragment ion type is C-Terminal side chain fragment ions.
|
static boolean |
FragmentIonUtilities.isImmoniumFragmentation(FragmentIonType ionType)
Check wether the fragment ion type is Immonium fragment ion.
|
static boolean |
FragmentIonUtilities.isNTerminalFragmentation(FragmentIonType ionType)
Check whether the fragment ion type is N-Terminal fragment ions.
|
static boolean |
FragmentIonUtilities.isNTerminalSideChainFragmentation(FragmentIonType ionType)
Check whether the fragment ion type is N-Terminal fragment ions.
|
Modifier and Type | Method and Description |
---|---|
FragmentIonType |
ProductIonType.getGroup() |
Copyright © 2015 European Bioinformatics Institute. All Rights Reserved.